Click here to switch to the map view.

The map label for this gene is yddA [C]

Identifier: 186477523

GI number: 186477523

Start: 3124044

End: 3125777

Strand: Direct

Name: yddA [C]

Synonym: Bphy_2775

Alternate gene names: 186477523

Gene position: 3124044-3125777 (Clockwise)

Preceding gene: 186477493

Following gene: 186477524

Centisome position: 89.79

GC content: 63.03

Gene sequence:

>1734_bases
ATGATCGACAACTCGAACAATCCGTCGGACATCACCGCGTGGGGCCTCATCAAGCCCTACTGGGTGTCCGAGGATCGATG
GAAGGCACGGGGGCTGCTCGCGCTCGTCATCGCGATGAACATGACGATGGTCGCGGCCAACGTCTGGTTCAACAGCTGGC
AGCGCACCTTCTTCGACGCAATCCAGCAATACAACTACCCCGTCTTCAAGTACTCGCTGCTGCAGTTCACGGTCATCGCG
CTCGCGCTGATCCTGCTCGGTTCGTACCGCACCTACTTCCGCCAGATGCTCGAGTTCCGCTGGCGGCAGTGGCTCACCGA
CCGCTATCTGCACGACTGGCTCGGCGACCGCGCGTATTACCGGATCGAGCGCGACAGTCTCGCCGACAACCCCGACCAGC
GGGTGTCCGCCGACCTGCAAGGGCTGGCCAGCGCCACGCTGAATCTGTCGCTCGGGCTGCTGTCGACCACCGTCACCCTG
TTCTCGTTCATCGTGATCCTGTGGAACCTGTCGGGCGCGCTGGCGTTCCACATGTTCGGTACGGAGTTCTCGATTCCGGG
CTACATGGTATGGGCCGCGCTGATTTACGCGGCGCTCGGCTCGTGGGTCACGCACAAGGTCAATCATCCCCTCGTATCGA
TCAACTACCAGCAGCAGCGCGTGGAAGCCGACTTCCGTTTTTCGCTGATCCGCATCCGCGAAAACGCCGACCAGATCGCG
CTGTATCAGGGCGAGCATTCGGAAGAGCAGGCGCTCAAGGGCGTGTTCGGACACATCCGCGACAACTGGCGTCTGATCAT
GCGCTTCACGCGGCGCTTCAATATCGTCGTGATCAGTTACTCGCAGCTGGCTATCGTGTTTCCATACATCGCCGCTGCGC
CGAAGTATTTCTCGAAGTCGATTTCGCTCGGCGTGTACCAGCAGGTGACGGGCGCCTTCGGCACCGTCAGCGATTCGTTT
TCCTGGTTCATCAACAATTACGATTCGCTCGCCGAGTGGCGCGCCACCGTCAACCGTCTGCGGGAATTCCATCGCGTGAT
GCGCTCGCAGCATCTGCATGAATCGGTCGTCGAAGGTACGGCGCACGGCGGCATCAACGTGCATCTGACGGACACAGTTT
CGATCGACGTGACGGACCTGCGCCTGCAGCGTCCAGATGGCGAAGCGCTGGCGAACGTCGGCTCGTTCCGCATCGCGCCG
AAGTCGCGCTGGCTCGTGCGCGGGCCGTCGGGCGCGGGCAAGAGCACGCTGATGCGCACGCTCGCGGGCCTGTGGCCGTT
CGGCGAAGGCACGATCGAAATGCCCGCCGGCGCGAAGCTGCTGTTCATCCCGCAGCGCAGCTATCTGCCCATCGGCACGC
TGAAGGCCGCGCTCTGTTATCCGTCGGATGCGTCCGCGTTTTCCGACGACATGTGTCGCGAAGTGCTCGGCGTCTGCCGT
CTATCCGAGTTCGCGGACCGGCTCGGCGAATCGGCTCATTGGGAGCGCTCGCTGTCGCCGGGCGAGCAGCAACGTCTCGC
GGCCGCACGCGCGTTGTTGCAGCAACCCGACTTCCTGTTCCTCGACGAGGCGACGAGCGCGCTCGACCCCGACAACGAGA
GCAACATCTACGGCGTGCTGCTCGAGCGCCTGCCGAACGCGGCCATCGTCAGCGTCGCGCATCGCAAGACGCTCGAAGCA
TTCCACGACCAGACGCTTTTCATCGAACGCGCAATCGAGCGCGAAGCGGCCTGA

Upstream 100 bases:

>100_bases
AACAATCGCAGCCCGGGCCACGAACTCGCAGGCATGCAGCAGCGCAAAGCGGCTACGCAGTGCATCGCGCCGCCCGGGCC
GACCGTATGAAAGGACGCTT

Downstream 100 bases:

>100_bases
GCGACGCGACGCTCACGCGGGTCGAATGCGCGATGCCCGCGACGGGCGCGGACTTTTGCAGAGAGGCCGCGCCCGCCCGG
GGCGTGGTCGGCCCCCCAGG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 577

Protein sequence:

>577_residues
MIDNSNNPSDITAWGLIKPYWVSEDRWKARGLLALVIAMNMTMVAANVWFNSWQRTFFDAIQQYNYPVFKYSLLQFTVIA
LALILLGSYRTYFRQMLEFRWRQWLTDRYLHDWLGDRAYYRIERDSLADNPDQRVSADLQGLASATLNLSLGLLSTTVTL
FSFIVILWNLSGALAFHMFGTEFSIPGYMVWAALIYAALGSWVTHKVNHPLVSINYQQQRVEADFRFSLIRIRENADQIA
LYQGEHSEEQALKGVFGHIRDNWRLIMRFTRRFNIVVISYSQLAIVFPYIAAAPKYFSKSISLGVYQQVTGAFGTVSDSF
SWFINNYDSLAEWRATVNRLREFHRVMRSQHLHESVVEGTAHGGINVHLTDTVSIDVTDLRLQRPDGEALANVGSFRIAP
KSRWLVRGPSGAGKSTLMRTLAGLWPFGEGTIEMPAGAKLLFIPQRSYLPIGTLKAALCYPSDASAFSDDMCREVLGVCR
LSEFADRLGESAHWERSLSPGEQQRLAAARALLQQPDFLFLDEATSALDPDNESNIYGVLLERLPNAAIVSVAHRKTLEA
FHDQTLFIERAIEREAA

Sequences:

>Translated_577_residues
MIDNSNNPSDITAWGLIKPYWVSEDRWKARGLLALVIAMNMTMVAANVWFNSWQRTFFDAIQQYNYPVFKYSLLQFTVIA
LALILLGSYRTYFRQMLEFRWRQWLTDRYLHDWLGDRAYYRIERDSLADNPDQRVSADLQGLASATLNLSLGLLSTTVTL
FSFIVILWNLSGALAFHMFGTEFSIPGYMVWAALIYAALGSWVTHKVNHPLVSINYQQQRVEADFRFSLIRIRENADQIA
LYQGEHSEEQALKGVFGHIRDNWRLIMRFTRRFNIVVISYSQLAIVFPYIAAAPKYFSKSISLGVYQQVTGAFGTVSDSF
SWFINNYDSLAEWRATVNRLREFHRVMRSQHLHESVVEGTAHGGINVHLTDTVSIDVTDLRLQRPDGEALANVGSFRIAP
KSRWLVRGPSGAGKSTLMRTLAGLWPFGEGTIEMPAGAKLLFIPQRSYLPIGTLKAALCYPSDASAFSDDMCREVLGVCR
LSEFADRLGESAHWERSLSPGEQQRLAAARALLQQPDFLFLDEATSALDPDNESNIYGVLLERLPNAAIVSVAHRKTLEA
FHDQTLFIERAIEREAA
>Mature_577_residues
MIDNSNNPSDITAWGLIKPYWVSEDRWKARGLLALVIAMNMTMVAANVWFNSWQRTFFDAIQQYNYPVFKYSLLQFTVIA
LALILLGSYRTYFRQMLEFRWRQWLTDRYLHDWLGDRAYYRIERDSLADNPDQRVSADLQGLASATLNLSLGLLSTTVTL
FSFIVILWNLSGALAFHMFGTEFSIPGYMVWAALIYAALGSWVTHKVNHPLVSINYQQQRVEADFRFSLIRIRENADQIA
LYQGEHSEEQALKGVFGHIRDNWRLIMRFTRRFNIVVISYSQLAIVFPYIAAAPKYFSKSISLGVYQQVTGAFGTVSDSF
SWFINNYDSLAEWRATVNRLREFHRVMRSQHLHESVVEGTAHGGINVHLTDTVSIDVTDLRLQRPDGEALANVGSFRIAP
KSRWLVRGPSGAGKSTLMRTLAGLWPFGEGTIEMPAGAKLLFIPQRSYLPIGTLKAALCYPSDASAFSDDMCREVLGVCR
LSEFADRLGESAHWERSLSPGEQQRLAAARALLQQPDFLFLDEATSALDPDNESNIYGVLLERLPNAAIVSVAHRKTLEA
FHDQTLFIERAIEREAA

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4506341, Length=581, Percent_Identity=25.9896729776248, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI4826958, Length=539, Percent_Identity=27.2727272727273, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI9945308, Length=549, Percent_Identity=23.6794171220401, Blast_Score=142, Evalue=1e-33,
Organism=Homo sapiens, GI7262393, Length=597, Percent_Identity=23.4505862646566, Blast_Score=135, Evalue=2e-31,
Organism=Homo sapiens, GI9955963, Length=220, Percent_Identity=30.9090909090909, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI42490749, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI148612844, Length=177, Percent_Identity=29.9435028248588, Blast_Score=69, Evalue=2e-11,
Organism=Homo sapiens, GI255708477, Length=177, Percent_Identity=29.3785310734463, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787772, Length=547, Percent_Identity=33.27239488117, Blast_Score=311, Evalue=9e-86,
Organism=Escherichia coli, GI1786575, Length=356, Percent_Identity=26.123595505618, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1787112, Length=208, Percent_Identity=32.2115384615385, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787143, Length=206, Percent_Identity=28.6407766990291, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17532409, Length=540, Percent_Identity=27.4074074074074, Blast_Score=182, Evalue=4e-46,
Organism=Caenorhabditis elegans, GI17532411, Length=512, Percent_Identity=27.1484375, Blast_Score=170, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17542146, Length=588, Percent_Identity=23.6394557823129, Blast_Score=158, Evalue=6e-39,
Organism=Caenorhabditis elegans, GI17564250, Length=592, Percent_Identity=24.3243243243243, Blast_Score=135, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI72000518, Length=616, Percent_Identity=23.8636363636364, Blast_Score=128, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17558960, Length=587, Percent_Identity=24.3611584327087, Blast_Score=124, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI72000520, Length=569, Percent_Identity=23.5500878734622, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI25146765, Length=433, Percent_Identity=24.4803695150115, Blast_Score=81, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71992285, Length=222, Percent_Identity=30.1801801801802, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI86564969, Length=446, Percent_Identity=23.542600896861, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71992070, Length=353, Percent_Identity=24.3626062322946, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71992066, Length=353, Percent_Identity=24.3626062322946, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71992080, Length=208, Percent_Identity=28.3653846153846, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17569081, Length=435, Percent_Identity=23.448275862069, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=187, Percent_Identity=28.3422459893048, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=264, Percent_Identity=24.6212121212121, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=189, Percent_Identity=28.042328042328, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567243, Length=188, Percent_Identity=28.7234042553192, Blast_Score=67, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6325110, Length=572, Percent_Identity=22.5524475524476, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6321752, Length=275, Percent_Identity=25.8181818181818, Blast_Score=74, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6324985, Length=191, Percent_Identity=32.4607329842932, Blast_Score=74, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6323217, Length=178, Percent_Identity=33.1460674157303, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24643394, Length=591, Percent_Identity=25.3807106598985, Blast_Score=159, Evalue=4e-39,
Organism=Drosophila melanogaster, GI24638550, Length=598, Percent_Identity=22.742474916388, Blast_Score=121, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24638552, Length=598, Percent_Identity=22.742474916388, Blast_Score=121, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24638554, Length=598, Percent_Identity=22.742474916388, Blast_Score=121, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24638546, Length=598, Percent_Identity=22.742474916388, Blast_Score=121, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24638556, Length=598, Percent_Identity=22.742474916388, Blast_Score=121, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24638548, Length=598, Percent_Identity=22.742474916388, Blast_Score=121, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24638558, Length=537, Percent_Identity=23.463687150838, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI21357907, Length=207, Percent_Identity=32.3671497584541, Blast_Score=80, Evalue=5e-15,
Organism=Drosophila melanogaster, GI85726357, Length=192, Percent_Identity=27.6041666666667, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24653245, Length=191, Percent_Identity=29.8429319371728, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281363262, Length=191, Percent_Identity=29.8429319371728, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 65541; Mature: 65541

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDNSNNPSDITAWGLIKPYWVSEDRWKARGLLALVIAMNMTMVAANVWFNSWQRTFFDA
CCCCCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQQYNYPVFKYSLLQFTVIALALILLGSYRTYFRQMLEFRWRQWLTDRYLHDWLGDRAYY
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
RIERDSLADNPDQRVSADLQGLASATLNLSLGLLSTTVTLFSFIVILWNLSGALAFHMFG
EEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEC
TEFSIPGYMVWAALIYAALGSWVTHKVNHPLVSINYQQQRVEADFRFSLIRIRENADQIA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCHHEEEEEEECCCCEEE
LYQGEHSEEQALKGVFGHIRDNWRLIMRFTRRFNIVVISYSQLAIVFPYIAAAPKYFSKS
EEECCCCHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCHHHHHHH
ISLGVYQQVTGAFGTVSDSFSWFINNYDSLAEWRATVNRLREFHRVMRSQHLHESVVEGT
CCHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AHGGINVHLTDTVSIDVTDLRLQRPDGEALANVGSFRIAPKSRWLVRGPSGAGKSTLMRT
CCCCEEEEEEEEEEEEEEEEEEECCCCHHHHCCCCEEECCCCCEEEECCCCCCHHHHHHH
LAGLWPFGEGTIEMPAGAKLLFIPQRSYLPIGTLKAALCYPSDASAFSDDMCREVLGVCR
HHHCCCCCCCCEECCCCCEEEEECCCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHH
LSEFADRLGESAHWERSLSPGEQQRLAAARALLQQPDFLFLDEATSALDPDNESNIYGVL
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCHHHHH
LERLPNAAIVSVAHRKTLEAFHDQTLFIERAIEREAA
HHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDNSNNPSDITAWGLIKPYWVSEDRWKARGLLALVIAMNMTMVAANVWFNSWQRTFFDA
CCCCCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQQYNYPVFKYSLLQFTVIALALILLGSYRTYFRQMLEFRWRQWLTDRYLHDWLGDRAYY
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
RIERDSLADNPDQRVSADLQGLASATLNLSLGLLSTTVTLFSFIVILWNLSGALAFHMFG
EEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEC
TEFSIPGYMVWAALIYAALGSWVTHKVNHPLVSINYQQQRVEADFRFSLIRIRENADQIA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCHHEEEEEEECCCCEEE
LYQGEHSEEQALKGVFGHIRDNWRLIMRFTRRFNIVVISYSQLAIVFPYIAAAPKYFSKS
EEECCCCHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCHHHHHHH
ISLGVYQQVTGAFGTVSDSFSWFINNYDSLAEWRATVNRLREFHRVMRSQHLHESVVEGT
CCHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AHGGINVHLTDTVSIDVTDLRLQRPDGEALANVGSFRIAPKSRWLVRGPSGAGKSTLMRT
CCCCEEEEEEEEEEEEEEEEEEECCCCHHHHCCCCEEECCCCCEEEECCCCCCHHHHHHH
LAGLWPFGEGTIEMPAGAKLLFIPQRSYLPIGTLKAALCYPSDASAFSDDMCREVLGVCR
HHHCCCCCCCCEECCCCCEEEEECCCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHH
LSEFADRLGESAHWERSLSPGEQQRLAAARALLQQPDFLFLDEATSALDPDNESNIYGVL
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCHHHHH
LERLPNAAIVSVAHRKTLEAFHDQTLFIERAIEREAA
HHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]