Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 186477511

GI number: 186477511

Start: 3113734

End: 3114489

Strand: Reverse

Name: yadH [H]

Synonym: Bphy_2763

Alternate gene names: 186477511

Gene position: 3114489-3113734 (Counterclockwise)

Preceding gene: 186477512

Following gene: 186477510

Centisome position: 89.52

GC content: 60.32

Gene sequence:

>756_bases
ATGAGCGGTTTTCGTACCCTGTTCTACAAAGAGCTGCTGCGCTTCTGGAAGGTCGCGTTCCAGACGGTGCTCGCACCCGT
GATCACCGCGCTGCTGTATCTGACGATCTTCGGCCACGCGCTGCGCGATCACGTGCAGGTCTATCCAGGCGTGCAGTACA
CGAGCTTCCTCGTGCCCGGCCTCGTGATGATGAGCGTGCTCCAGAATGCGTTCGCGAACAGCTCGTCGTCGCTGATTCAA
TCGAAGATCACGGGCAACCTCGTGTTCGTGCTGTTGCCGCCGTTGTCGCACTACGAGATGTACGCGGCTTATGTGCTTGC
AGCCGTCGTGCGCGGGCTGTGCGTCGGGCTGGGCGTATTCATCGTGACCGTGTGGTTCATTCCGATGAGCTTCACGGCCC
CGCTCTACATCATCGCGTTCGCCGTGCTGGGCTCGGCGATTCTCGGCACGCTCGGCGTGATCGCCGGCATCTGGGCGGAG
AAGTTCGACCAGCTCGCCGCGTTCCAGAATTTTCTGATCATGCCGCTCACGTTCCTTTCGGGCGTGTTCTACTCGACACA
TACGCTGCCGTCCGGCTGGCGCGAGGTTTCGCGGCTCAATCCGTTTTTCTACATGATCGACGGCTTTCGCTATGGCTTCT
TCGGCATGTCGGATATCGATCCGCTGCGGAGCCTTTTGATTGTCGGCGGTTTCTTCGTCGTGCTGGCCGTGCTGGCGATG
CGCATGCTCGCGTCCGGCTACAAGCTGCGTCACTAG

Upstream 100 bases:

>100_bases
CGGCGGGCTGCACGTTCGACGAAATCGAGGTGCGCAAGGCCGACCTCGAAGATGTTTTCCTGCAGGTGATGAGCGGGCCG
GAAGTGGTCGAGGGATTGGC

Downstream 100 bases:

>100_bases
GAGCACTGAAATGCTACCCACACCCGAACAGGTCAAGAACTACATCGCGGCGGGCCTTCCTTGCGAGCATCTCGAAGTGG
AAGGCGACGGCCAGCATTTT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSGFRTLFYKELLRFWKVAFQTVLAPVITALLYLTIFGHALRDHVQVYPGVQYTSFLVPGLVMMSVLQNAFANSSSSLIQ
SKITGNLVFVLLPPLSHYEMYAAYVLAAVVRGLCVGLGVFIVTVWFIPMSFTAPLYIIAFAVLGSAILGTLGVIAGIWAE
KFDQLAAFQNFLIMPLTFLSGVFYSTHTLPSGWREVSRLNPFFYMIDGFRYGFFGMSDIDPLRSLLIVGGFFVVLAVLAM
RMLASGYKLRH

Sequences:

>Translated_251_residues
MSGFRTLFYKELLRFWKVAFQTVLAPVITALLYLTIFGHALRDHVQVYPGVQYTSFLVPGLVMMSVLQNAFANSSSSLIQ
SKITGNLVFVLLPPLSHYEMYAAYVLAAVVRGLCVGLGVFIVTVWFIPMSFTAPLYIIAFAVLGSAILGTLGVIAGIWAE
KFDQLAAFQNFLIMPLTFLSGVFYSTHTLPSGWREVSRLNPFFYMIDGFRYGFFGMSDIDPLRSLLIVGGFFVVLAVLAM
RMLASGYKLRH
>Mature_250_residues
SGFRTLFYKELLRFWKVAFQTVLAPVITALLYLTIFGHALRDHVQVYPGVQYTSFLVPGLVMMSVLQNAFANSSSSLIQS
KITGNLVFVLLPPLSHYEMYAAYVLAAVVRGLCVGLGVFIVTVWFIPMSFTAPLYIIAFAVLGSAILGTLGVIAGIWAEK
FDQLAAFQNFLIMPLTFLSGVFYSTHTLPSGWREVSRLNPFFYMIDGFRYGFFGMSDIDPLRSLLIVGGFFVVLAVLAMR
MLASGYKLRH

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=246, Percent_Identity=35.7723577235772, Blast_Score=163, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27948; Mature: 27816

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCCC
>Mature Secondary Structure 
SGFRTLFYKELLRFWKVAFQTVLAPVITALLYLTIFGHALRDHVQVYPGVQYTSFLVPG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LVMMSVLQNAFANSSSSLIQSKITGNLVFVLLPPLSHYEMYAAYVLAAVVRGLCVGLGVF
HHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVTVWFIPMSFTAPLYIIAFAVLGSAILGTLGVIAGIWAEKFDQLAAFQNFLIMPLTFLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVFYSTHTLPSGWREVSRLNPFFYMIDGFRYGFFGMSDIDPLRSLLIVGGFFVVLAVLAM
HHHHHHCCCCHHHHHHHHCCCHHEEHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RMLASGYKLRH
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]