| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is yjjK [C]
Identifier: 186477461
GI number: 186477461
Start: 3068066
End: 3069733
Strand: Direct
Name: yjjK [C]
Synonym: Bphy_2713
Alternate gene names: 186477461
Gene position: 3068066-3069733 (Clockwise)
Preceding gene: 186477460
Following gene: 186477462
Centisome position: 88.18
GC content: 62.23
Gene sequence:
>1668_bases ATGGCCCAATACGTCTTCACCATGAACCGGGTCGGCAAAATCGTGCCGCCCAAACGCCACATTCTGAAAGACATCTCGCT GTCGTTTTTCCCCGGCGCGAAAATTGGTCTGCTCGGCCTGAACGGCTCGGGTAAGTCCACGCTGATCAAGATCATGGCCG GCGTCGACAAGGATATCGAAGGCGAAGCCACGCCAATGCCGAACCTGAACATCGGCTATCTGCCGCAGGAGCCGCAGCTC GATCCGCAAAAGACCGTGCGCGAAGCCGTCGAAGAAGGCCTCGGCGACGTGTTCCAGGCGCAGAAGAAGCTTGACGAAAT CTACGCTGCCTACGCCGAGCCGGACGCCGATTTCGACGCGCTCGCCGCCGAGCAGGCGAAGTACGAGGCCATCCTCGCGA CATCGGATGGCGGCAGCCCCGAACAGCAGCTCGAAGTCGCCGCCGACGCGCTGCGCCTGCCGCCGTGGGACGCGAAGATC GAACACCTGTCGGGCGGCGAGAAGCGCCGCGTCGCACTGTGCAAGCTGCTGCTCGAAAAGCCCGACATGCTGCTGCTCGA CGAACCGACCAACCACCTCGACGCCGAATCCGTCGAATGGCTGGAGCAGTTCCTCACGCGCTTCCCAGGCACCGTCGTCG CCGTCACCCACGACCGCTACTTCCTCGACAACGCCGCCGAGTGGATTCTCGAACTCGACCGCGGCCACGGCATTCCGTGG AAGGGTAACTACAGCAGCTGGCTCGACCAGAAGGAAGACCGCCTCAAGCAGGAAGAAGCGTCGGAATCCGCGCGTCAAAA GGCGATCAAGAAGGAACTGGAATGGGTGCGGCAAAATCCGAAGGGCCGTCAGGCCAAGTCGAAGGCACGTATCGCGCGTT TTGAGGAACTGAACAGCCAGGAGTACCAGAAGCGCAATGAAACCCAGGAAATCTTCATTCCCGTCGGCGACCGCCTCGGT AATGAAGTGGTCGAGTTCAAGAATGTCAGCAAGTCGTACGGCGATCGCCTGCTGATCGACAACCTGAGCTTCAAGATTCC GGCAGGCGCGATCGTCGGCATCATCGGCCCGAACGGCGCCGGCAAGTCGACGCTGTTCCGCATGCTCACAGGCAAGGAAC AGCCCGATTCGGGCGAAATCGTTCAGGGTCCGACCGTGAAGCTCGCATACGTGGATCAGAGCCGCGACGCGCTCGACGGC TCGAAGACCGTGTTCGAAGCAATCTCCGGCGGCGCAGACGTGCTGACGGTCGGCAAGTACGAGACGCCGTCGCGCGCCTA CATCGGCCGCTTCAACTTCAAGGGCGGCGATCAGCAGAAGATCGTCGGCAATCTGTCGGGCGGCGAACGCGGCCGTCTTC ATCTGGCGAAGACGCTGATCGCCGGCGGCAACATGCTGCTGCTCGACGAACCGTCAAACGACCTCGACGTCGAAACGCTG CGCGCGCTCGAAGACGCCCTCCTCGAGTTCGCCGGCTCGGTGATGGTCATCTCGCACGACCGCTGGTTCCTCGACCGGAT CGCGACGCATATCCTCGCCTTCGAAGGCGATTCTCAAGTCACCTTCTTCGACGGCAACTACCAGGAGTACGAAGCGGACA AGCGCGCGCGCCTGGGCGAAGAAGCGGCGCGCCCCAAGCGTCTGCGCTACAAGCCGATCAGCCGCTAA
Upstream 100 bases:
>100_bases AAGCCCCAGCGAGCTCAAGAAGTACAATGCCAGATCCGCCCGCCTCCAGCCGGCGCCAGCACGCGCAGTGCCAAACTCCA ATTTCATCTGTCAAGCAAAA
Downstream 100 bases:
>100_bases GCGTTCGTTGCATGGCCGTCCGCAATCGGACCGCGCTCGCGGTTCGATGCGAACGGCATAAGAGTTGCTCTCCATCCCTC GCAGGATCGCATCCGGTCCA
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 555; Mature: 554
Protein sequence:
>555_residues MAQYVFTMNRVGKIVPPKRHILKDISLSFFPGAKIGLLGLNGSGKSTLIKIMAGVDKDIEGEATPMPNLNIGYLPQEPQL DPQKTVREAVEEGLGDVFQAQKKLDEIYAAYAEPDADFDALAAEQAKYEAILATSDGGSPEQQLEVAADALRLPPWDAKI EHLSGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVEWLEQFLTRFPGTVVAVTHDRYFLDNAAEWILELDRGHGIPW KGNYSSWLDQKEDRLKQEEASESARQKAIKKELEWVRQNPKGRQAKSKARIARFEELNSQEYQKRNETQEIFIPVGDRLG NEVVEFKNVSKSYGDRLLIDNLSFKIPAGAIVGIIGPNGAGKSTLFRMLTGKEQPDSGEIVQGPTVKLAYVDQSRDALDG SKTVFEAISGGADVLTVGKYETPSRAYIGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLIAGGNMLLLDEPSNDLDVETL RALEDALLEFAGSVMVISHDRWFLDRIATHILAFEGDSQVTFFDGNYQEYEADKRARLGEEAARPKRLRYKPISR
Sequences:
>Translated_555_residues MAQYVFTMNRVGKIVPPKRHILKDISLSFFPGAKIGLLGLNGSGKSTLIKIMAGVDKDIEGEATPMPNLNIGYLPQEPQL DPQKTVREAVEEGLGDVFQAQKKLDEIYAAYAEPDADFDALAAEQAKYEAILATSDGGSPEQQLEVAADALRLPPWDAKI EHLSGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVEWLEQFLTRFPGTVVAVTHDRYFLDNAAEWILELDRGHGIPW KGNYSSWLDQKEDRLKQEEASESARQKAIKKELEWVRQNPKGRQAKSKARIARFEELNSQEYQKRNETQEIFIPVGDRLG NEVVEFKNVSKSYGDRLLIDNLSFKIPAGAIVGIIGPNGAGKSTLFRMLTGKEQPDSGEIVQGPTVKLAYVDQSRDALDG SKTVFEAISGGADVLTVGKYETPSRAYIGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLIAGGNMLLLDEPSNDLDVETL RALEDALLEFAGSVMVISHDRWFLDRIATHILAFEGDSQVTFFDGNYQEYEADKRARLGEEAARPKRLRYKPISR >Mature_554_residues AQYVFTMNRVGKIVPPKRHILKDISLSFFPGAKIGLLGLNGSGKSTLIKIMAGVDKDIEGEATPMPNLNIGYLPQEPQLD PQKTVREAVEEGLGDVFQAQKKLDEIYAAYAEPDADFDALAAEQAKYEAILATSDGGSPEQQLEVAADALRLPPWDAKIE HLSGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVEWLEQFLTRFPGTVVAVTHDRYFLDNAAEWILELDRGHGIPWK GNYSSWLDQKEDRLKQEEASESARQKAIKKELEWVRQNPKGRQAKSKARIARFEELNSQEYQKRNETQEIFIPVGDRLGN EVVEFKNVSKSYGDRLLIDNLSFKIPAGAIVGIIGPNGAGKSTLFRMLTGKEQPDSGEIVQGPTVKLAYVDQSRDALDGS KTVFEAISGGADVLTVGKYETPSRAYIGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLIAGGNMLLLDEPSNDLDVETLR ALEDALLEFAGSVMVISHDRWFLDRIATHILAFEGDSQVTFFDGNYQEYEADKRARLGEEAARPKRLRYKPISR
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=532, Percent_Identity=28.3834586466165, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI27881506, Length=547, Percent_Identity=29.6160877513711, Blast_Score=186, Evalue=3e-47, Organism=Homo sapiens, GI10947137, Length=547, Percent_Identity=29.6160877513711, Blast_Score=186, Evalue=3e-47, Organism=Homo sapiens, GI69354671, Length=546, Percent_Identity=28.5714285714286, Blast_Score=161, Evalue=2e-39, Organism=Homo sapiens, GI10947135, Length=546, Percent_Identity=28.5714285714286, Blast_Score=161, Evalue=2e-39, Organism=Homo sapiens, GI30795238, Length=176, Percent_Identity=30.6818181818182, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI27881501, Length=176, Percent_Identity=30.6818181818182, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI21536376, Length=227, Percent_Identity=29.0748898678414, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI150417984, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI47078218, Length=209, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI45446740, Length=209, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=28.3018867924528, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI171184400, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI2367384, Length=555, Percent_Identity=72.2522522522522, Blast_Score=840, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=514, Percent_Identity=33.4630350194552, Blast_Score=269, Evalue=4e-73, Organism=Escherichia coli, GI1789751, Length=519, Percent_Identity=32.5626204238921, Blast_Score=242, Evalue=4e-65, Organism=Escherichia coli, GI1787041, Length=519, Percent_Identity=32.1772639691715, Blast_Score=239, Evalue=4e-64, Organism=Escherichia coli, GI87081782, Length=584, Percent_Identity=25, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI48994943, Length=477, Percent_Identity=24.5283018867925, Blast_Score=96, Evalue=7e-21, Organism=Escherichia coli, GI87081709, Length=193, Percent_Identity=31.6062176165803, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788761, Length=198, Percent_Identity=31.8181818181818, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1788165, Length=190, Percent_Identity=32.1052631578947, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1786975, Length=397, Percent_Identity=25.4408060453401, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1786345, Length=226, Percent_Identity=29.646017699115, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI87081791, Length=194, Percent_Identity=31.9587628865979, Blast_Score=79, Evalue=8e-16, Organism=Escherichia coli, GI1787164, Length=183, Percent_Identity=29.5081967213115, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=27.4038461538462, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1790467, Length=218, Percent_Identity=30.2752293577982, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=29.5238095238095, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1787712, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1788225, Length=211, Percent_Identity=26.0663507109005, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1788450, Length=209, Percent_Identity=26.7942583732057, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1786563, Length=190, Percent_Identity=25.2631578947368, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789873, Length=229, Percent_Identity=25.3275109170306, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1787089, Length=242, Percent_Identity=28.099173553719, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17559834, Length=544, Percent_Identity=27.7573529411765, Blast_Score=199, Evalue=4e-51, Organism=Caenorhabditis elegans, GI17553372, Length=528, Percent_Identity=30.6818181818182, Blast_Score=193, Evalue=2e-49, Organism=Caenorhabditis elegans, GI17555318, Length=553, Percent_Identity=27.8481012658228, Blast_Score=174, Evalue=1e-43, Organism=Caenorhabditis elegans, GI193208177, Length=229, Percent_Identity=28.82096069869, Blast_Score=73, Evalue=5e-13, Organism=Caenorhabditis elegans, GI212646699, Length=184, Percent_Identity=27.7173913043478, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115534520, Length=199, Percent_Identity=29.6482412060301, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569143, Length=233, Percent_Identity=28.755364806867, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569145, Length=248, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=538, Percent_Identity=29.9256505576208, Blast_Score=200, Evalue=5e-52, Organism=Saccharomyces cerevisiae, GI6321121, Length=544, Percent_Identity=26.2867647058824, Blast_Score=184, Evalue=4e-47, Organism=Saccharomyces cerevisiae, GI6324314, Length=376, Percent_Identity=26.3297872340426, Blast_Score=114, Evalue=3e-26, Organism=Saccharomyces cerevisiae, GI6323278, Length=314, Percent_Identity=26.7515923566879, Blast_Score=114, Evalue=4e-26, Organism=Saccharomyces cerevisiae, GI6325030, Length=382, Percent_Identity=26.4397905759162, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6320266, Length=375, Percent_Identity=24.8, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323959, Length=200, Percent_Identity=29.5, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI24642252, Length=545, Percent_Identity=28.256880733945, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI18859989, Length=545, Percent_Identity=28.256880733945, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI24666836, Length=532, Percent_Identity=28.5714285714286, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI24641342, Length=545, Percent_Identity=28.6238532110092, Blast_Score=181, Evalue=2e-45, Organism=Drosophila melanogaster, GI21357907, Length=200, Percent_Identity=30.5, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007184, Length=166, Percent_Identity=31.9277108433735, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI221500365, Length=166, Percent_Identity=31.9277108433735, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI85725262, Length=210, Percent_Identity=27.6190476190476, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666092, Length=207, Percent_Identity=28.5024154589372, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 61729; Mature: 61597
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQYVFTMNRVGKIVPPKRHILKDISLSFFPGAKIGLLGLNGSGKSTLIKIMAGVDKDIE CCCEEEEHHHCCCCCCCHHHHHHHCCCEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCC GEATPMPNLNIGYLPQEPQLDPQKTVREAVEEGLGDVFQAQKKLDEIYAAYAEPDADFDA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH LAAEQAKYEAILATSDGGSPEQQLEVAADALRLPPWDAKIEHLSGGEKRRVALCKLLLEK HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHCC PDMLLLDEPTNHLDAESVEWLEQFLTRFPGTVVAVTHDRYFLDNAAEWILELDRGHGIPW CCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCC KGNYSSWLDQKEDRLKQEEASESARQKAIKKELEWVRQNPKGRQAKSKARIARFEELNSQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHH EYQKRNETQEIFIPVGDRLGNEVVEFKNVSKSYGDRLLIDNLSFKIPAGAIVGIIGPNGA HHHHCCCCEEEEEECCHHCCHHHHHHHHHHHHHCCEEEEECCCEEECCCEEEEEECCCCC GKSTLFRMLTGKEQPDSGEIVQGPTVKLAYVDQSRDALDGSKTVFEAISGGADVLTVGKY CHHHHHHHHCCCCCCCCCCEECCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEECCC ETPSRAYIGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLIAGGNMLLLDEPSNDLDVETL CCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHH RALEDALLEFAGSVMVISHDRWFLDRIATHILAFEGDSQVTFFDGNYQEYEADKRARLGE HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHEEECCCCEEEEECCCCHHHHHHHHHHCCH EAARPKRLRYKPISR HHCCCCCCCCCCCCC >Mature Secondary Structure AQYVFTMNRVGKIVPPKRHILKDISLSFFPGAKIGLLGLNGSGKSTLIKIMAGVDKDIE CCEEEEHHHCCCCCCCHHHHHHHCCCEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCC GEATPMPNLNIGYLPQEPQLDPQKTVREAVEEGLGDVFQAQKKLDEIYAAYAEPDADFDA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH LAAEQAKYEAILATSDGGSPEQQLEVAADALRLPPWDAKIEHLSGGEKRRVALCKLLLEK HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHCC PDMLLLDEPTNHLDAESVEWLEQFLTRFPGTVVAVTHDRYFLDNAAEWILELDRGHGIPW CCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCC KGNYSSWLDQKEDRLKQEEASESARQKAIKKELEWVRQNPKGRQAKSKARIARFEELNSQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHH EYQKRNETQEIFIPVGDRLGNEVVEFKNVSKSYGDRLLIDNLSFKIPAGAIVGIIGPNGA HHHHCCCCEEEEEECCHHCCHHHHHHHHHHHHHCCEEEEECCCEEECCCEEEEEECCCCC GKSTLFRMLTGKEQPDSGEIVQGPTVKLAYVDQSRDALDGSKTVFEAISGGADVLTVGKY CHHHHHHHHCCCCCCCCCCEECCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEECCC ETPSRAYIGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLIAGGNMLLLDEPSNDLDVETL CCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHH RALEDALLEFAGSVMVISHDRWFLDRIATHILAFEGDSQVTFFDGNYQEYEADKRARLGE HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHEEECCCCEEEEECCCCHHHHHHHHHHCCH EAARPKRLRYKPISR HHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]