| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is aroE [H]
Identifier: 186477370
GI number: 186477370
Start: 2960705
End: 2961577
Strand: Reverse
Name: aroE [H]
Synonym: Bphy_2622
Alternate gene names: 186477370
Gene position: 2961577-2960705 (Counterclockwise)
Preceding gene: 186477371
Following gene: 186477369
Centisome position: 85.12
GC content: 68.73
Gene sequence:
>873_bases ATGAGCTCGAATCAAAACACGCCGCGCGACAAATATGCGGTGATCGGCAATCCGATCGCCCACAGCAAGTCGCCCTTGAT TCACGCGCAGTTTGCCGAGCAAACGGGGCAGCCCGTCGAATATGGCCGGCTGCTGGCACCCGTCGACCAGTTCGTCGCGC ACGTGCGCGCTTTCATCGACGAAGGCGGCCGCGGCATGAACGTGACCGTGCCGTTCAAGCTCGACGCGCACGCGTTCGCG ACCGTGCTGTCGCCGCGCGCGGCAGCGGCGGGCGCCGTCAATACGCTGCGCTTCGAAAAGGACGGCGGCGTGTATGGCGA CAACACGGACGGCTTCGGCCTCGTGCGCGATATCGAAGTGAACCTCGGTGTGCCGCTTGCGGGCGCGCGCGTGCTGCTGC TGGGCGCGGGCGGCGCGGCACGCGGCGTCGTGCTGCCGATGCTCGAACGCAACCCGCACTCGCTGACCATCGTGAACCGC ACCGCGTCGAAGGCCCACGAGCTCGTCGCACAATTCGCGAATGGGGCCAGCGCTGCCGCCTGCCGTCTCACAGGCGGCAG CGCGCAGGCGATCGAAGCGGGCGCGTACGACGTGATCGTCAACGCCACGGCGAGCAGCCTCGATGCGTCGCTGCCCGAGT GCGATGACGGCGCGTTCGGCACGGGCACGCTCGCGTACGACATGATGTATGGGGCACAGCCGACCGTTTTCATGCAGCAC GCCAGCAGGCTCGGCGCGCGCGCGGCGGATGGACTCGGCATGCTGGTGGAGCAGGCGGCAGAGTCGTTCTTCGTCTGGCG CGGCGTGCGTCCCGACGGCGCACCCGTGCTGGCGGCGCTGCGCGAGATGCTGCGCGCACCGCAAAGCGCCTGA
Upstream 100 bases:
>100_bases CCGACACGGGCGCGTCGGCGGGCGAGCCGTCGGCCGACGGCGACACGCCGGCCTCCGCCAATGACAACGACTCGACGCAG CACGCGACGGAGCAGGGTCA
Downstream 100 bases:
>100_bases CGGCGCACGCTCCGTCCGTTAGCCGACTTGACGACATCACAGCGACGACATGGCGACGACGATGACCAAAGGAAGGCGTG CAAAGGGCCAGGCGGTGAGC
Product: shikimate 5-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MSSNQNTPRDKYAVIGNPIAHSKSPLIHAQFAEQTGQPVEYGRLLAPVDQFVAHVRAFIDEGGRGMNVTVPFKLDAHAFA TVLSPRAAAAGAVNTLRFEKDGGVYGDNTDGFGLVRDIEVNLGVPLAGARVLLLGAGGAARGVVLPMLERNPHSLTIVNR TASKAHELVAQFANGASAAACRLTGGSAQAIEAGAYDVIVNATASSLDASLPECDDGAFGTGTLAYDMMYGAQPTVFMQH ASRLGARAADGLGMLVEQAAESFFVWRGVRPDGAPVLAALREMLRAPQSA
Sequences:
>Translated_290_residues MSSNQNTPRDKYAVIGNPIAHSKSPLIHAQFAEQTGQPVEYGRLLAPVDQFVAHVRAFIDEGGRGMNVTVPFKLDAHAFA TVLSPRAAAAGAVNTLRFEKDGGVYGDNTDGFGLVRDIEVNLGVPLAGARVLLLGAGGAARGVVLPMLERNPHSLTIVNR TASKAHELVAQFANGASAAACRLTGGSAQAIEAGAYDVIVNATASSLDASLPECDDGAFGTGTLAYDMMYGAQPTVFMQH ASRLGARAADGLGMLVEQAAESFFVWRGVRPDGAPVLAALREMLRAPQSA >Mature_289_residues SSNQNTPRDKYAVIGNPIAHSKSPLIHAQFAEQTGQPVEYGRLLAPVDQFVAHVRAFIDEGGRGMNVTVPFKLDAHAFAT VLSPRAAAAGAVNTLRFEKDGGVYGDNTDGFGLVRDIEVNLGVPLAGARVLLLGAGGAARGVVLPMLERNPHSLTIVNRT ASKAHELVAQFANGASAAACRLTGGSAQAIEAGAYDVIVNATASSLDASLPECDDGAFGTGTLAYDMMYGAQPTVFMQHA SRLGARAADGLGMLVEQAAESFFVWRGVRPDGAPVLAALREMLRAPQSA
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1789675, Length=278, Percent_Identity=48.2014388489209, Blast_Score=238, Evalue=3e-64, Organism=Escherichia coli, GI1787983, Length=269, Percent_Identity=29.7397769516729, Blast_Score=93, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6320332, Length=164, Percent_Identity=32.3170731707317, Blast_Score=80, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR011342 - InterPro: IPR013708 - InterPro: IPR022893 - InterPro: IPR006151 [H]
Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 30213; Mature: 30081
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSNQNTPRDKYAVIGNPIAHSKSPLIHAQFAEQTGQPVEYGRLLAPVDQFVAHVRAFID CCCCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH EGGRGMNVTVPFKLDAHAFATVLSPRAAAAGAVNTLRFEKDGGVYGDNTDGFGLVRDIEV CCCCCCEEEEEEEECHHHHHHHHCCHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEE NLGVPLAGARVLLLGAGGAARGVVLPMLERNPHSLTIVNRTASKAHELVAQFANGASAAA ECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCEE CRLTGGSAQAIEAGAYDVIVNATASSLDASLPECDDGAFGTGTLAYDMMYGAQPTVFMQH EEECCCCCCEEECCCEEEEEECCHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH ASRLGARAADGLGMLVEQAAESFFVWRGVRPDGAPVLAALREMLRAPQSA HHHHCCHHCCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure SSNQNTPRDKYAVIGNPIAHSKSPLIHAQFAEQTGQPVEYGRLLAPVDQFVAHVRAFID CCCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH EGGRGMNVTVPFKLDAHAFATVLSPRAAAAGAVNTLRFEKDGGVYGDNTDGFGLVRDIEV CCCCCCEEEEEEEECHHHHHHHHCCHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEE NLGVPLAGARVLLLGAGGAARGVVLPMLERNPHSLTIVNRTASKAHELVAQFANGASAAA ECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCEE CRLTGGSAQAIEAGAYDVIVNATASSLDASLPECDDGAFGTGTLAYDMMYGAQPTVFMQH EEECCCCCCEEECCCEEEEEECCHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH ASRLGARAADGLGMLVEQAAESFFVWRGVRPDGAPVLAALREMLRAPQSA HHHHCCHHCCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA