| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186477368
Identifier: 186477368
GI number: 186477368
Start: 2959327
End: 2959839
Strand: Direct
Name: 186477368
Synonym: Bphy_2620
Alternate gene names: NA
Gene position: 2959327-2959839 (Clockwise)
Preceding gene: 186477356
Following gene: 186477374
Centisome position: 85.06
GC content: 58.67
Gene sequence:
>513_bases ATGATGAACAAGACTTTACTGGCATGTGCAGCGATGGCAGTCAGCGCTGCAGCACAGGCGCAACCGACCCAGCAGCAACT GATCGACGATTTCTCCGGCCCGTATGTCGGCGCCAAACTGGGCGTGAATGTGTCGAGCGCATCGGGCGCCACGAACAAGC CAACGCACTCGACGATTTTCCCCGGCTTGGTTGCCGGCTATGGCTTCAACGCAGGCCCTGTGGTGCTGGGCGCCGAGCTG TTCGCCGATTTGCATCACGGTTCGGCGACCTTCAAGGACGGCGGGATCGACGCGAAGATTGGCTACCCCATTGGTTCGCT GATGCCCTATGCGCGTCTTGGCGTGACAACCGACTGGCCTGCGTCGCGCTTCAATTACGGGCTGGGCGTCGAATATATGG TCATGAAAAACCTGAGCCTGTTCTCGGAATGGACGCACGATTCAACCGATGCCGACAACACGCACTGGCGCAATAACAGT TTCACGATCGGCGCAAGTTACCGCTTCCGGTAA
Upstream 100 bases:
>100_bases TCTAAGTCGACGCTTAAAAGGTTTCGGGAAGACAGTTTCGGACACTCCCAGATCTATTCGATTTTCAAGCGCTCTCGCGA TTTTTTAGGTCTCCAGAACA
Downstream 100 bases:
>100_bases GCAGCCTTCAGAAGCAAAAAACGGCGATTATCTGCACGATAATCGCCGTTTCGATTTGCGCCGGGATTGAGGTCGTCACT CCGGCAATTCCGCTGCCCCC
Product: OmpA domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MMNKTLLACAAMAVSAAAQAQPTQQQLIDDFSGPYVGAKLGVNVSSASGATNKPTHSTIFPGLVAGYGFNAGPVVLGAEL FADLHHGSATFKDGGIDAKIGYPIGSLMPYARLGVTTDWPASRFNYGLGVEYMVMKNLSLFSEWTHDSTDADNTHWRNNS FTIGASYRFR
Sequences:
>Translated_170_residues MMNKTLLACAAMAVSAAAQAQPTQQQLIDDFSGPYVGAKLGVNVSSASGATNKPTHSTIFPGLVAGYGFNAGPVVLGAEL FADLHHGSATFKDGGIDAKIGYPIGSLMPYARLGVTTDWPASRFNYGLGVEYMVMKNLSLFSEWTHDSTDADNTHWRNNS FTIGASYRFR >Mature_170_residues MMNKTLLACAAMAVSAAAQAQPTQQQLIDDFSGPYVGAKLGVNVSSASGATNKPTHSTIFPGLVAGYGFNAGPVVLGAEL FADLHHGSATFKDGGIDAKIGYPIGSLMPYARLGVTTDWPASRFNYGLGVEYMVMKNLSLFSEWTHDSTDADNTHWRNNS FTIGASYRFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18131; Mature: 18131
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNKTLLACAAMAVSAAAQAQPTQQQLIDDFSGPYVGAKLGVNVSSASGATNKPTHSTIF CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEECEEECCEECCCCCCCCCCCCCHHC PGLVAGYGFNAGPVVLGAELFADLHHGSATFKDGGIDAKIGYPIGSLMPYARLGVTTDWP CHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHCCHHHHCCCCCCC ASRFNYGLGVEYMVMKNLSLFSEWTHDSTDADNTHWRNNSFTIGASYRFR HHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEECEEECC >Mature Secondary Structure MMNKTLLACAAMAVSAAAQAQPTQQQLIDDFSGPYVGAKLGVNVSSASGATNKPTHSTIF CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEECEEECCEECCCCCCCCCCCCCHHC PGLVAGYGFNAGPVVLGAELFADLHHGSATFKDGGIDAKIGYPIGSLMPYARLGVTTDWP CHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHCCHHHHCCCCCCC ASRFNYGLGVEYMVMKNLSLFSEWTHDSTDADNTHWRNNSFTIGASYRFR HHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEECEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA