Click here to switch to the map view.

The map label for this gene is araH [H]

Identifier: 186477361

GI number: 186477361

Start: 2951397

End: 2952413

Strand: Reverse

Name: araH [H]

Synonym: Bphy_2613

Alternate gene names: 186477361

Gene position: 2952413-2951397 (Counterclockwise)

Preceding gene: 186477362

Following gene: 186477360

Centisome position: 84.86

GC content: 62.83

Gene sequence:

>1017_bases
ATGCAAGCCAGAGAAAACCTCGCGCAACAGGCTGCCAAGAGCGCCGCCGAAGCGCTGATCCCGCAAGCCAGCGACAAGCA
GAAGTGGTGGCAGCAGATCACCGAATACAGCCTGATCGTGATCTTCGCGGTGATGTTCATCACGATGTCGCTGACCGTCG
ATCACTTCTTCTCGATCGAGAACATGCTCGGCCTCGCACTGTCGATTTCGCAGATCGGCATGGTCGCGTGCACGATGATG
TTCTGTCTCGCGTCGCGTGACTTCGACCTGTCCATCGGCTCGACGGTCGCCTTCGCGGGCGTGCTGTGCGCGATGGTGCT
CAACGCGACGGGCAACACGTTCATCGCGATCGTCGCCGCAGTCGTGGCCGGTTCCGTGATCGGTTTCGTCAACGGCGCGG
TGATCGCGTACCTGCGCATCAACGCGCTGATCACGACGCTCGCGACGATGGAAATCGTGCGCGGCCTCGGCTTCATCGTG
TCGCACGGTCAGGCCGTGGGCGTGTCGTCGGACACGTTCATCGCGCTCGGCAGTCTGTCGATGTTCGGCGTGTCGCTGCC
CATCTGGGTGACGCTGGTCTGCTTCATCGTGTTCGGCGTAATGCTGAACTCGACGGTGTACGGCCGCAACACGCTGGCGA
TCGGCGGCAATCCGGAAGCATCGCGTCTCGCCGGGATCAATGTCGAACGCACGCGCGTCTACATCTTCCTGATTCAGGGC
GCGGTGACGGCGCTGGCGGGCGTGATCCTCGCGTCGCGCATCACGTCGGGTCAGCCGAATGCAGCGGAAGGCTTCGAGCT
GAACGTGATTTCGGCGTGCGTGTTGGGCGGCGTGTCGCTGCTCGGCGGCCGCGCGACGATTTCGGGCGTCGTGATCGGTG
TGCTCATCATGGGCACCGTCGAAAACGTGATGAACCTGATGAACATCGACGCGTTCTATCAGTACCTCGTGCGCGGCGCG
ATCCTGCTCGCGGCCGTGCTGCTGGACCAGCTGAAGAACCGCGGTTCGCGCGACTGA

Upstream 100 bases:

>100_bases
TGAGTGTCCGGGTCGATTGAAACGAGAACCGCAAGACATCTGTAACTGACGGGACACGCAACGGTCCTGTAACCCGTGGG
CAACGGGAGGAGCAAACCAA

Downstream 100 bases:

>100_bases
TGCGCGGCTGATTCTTCATAACCCTCAACGCCAGAAGAAGGAAATCGAACGATGTCGTCTCCCGCCAACGCGAACGCGCG
TGAAGAACAGAGCGCGTATG

Product: L-arabinose transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQARENLAQQAAKSAAEALIPQASDKQKWWQQITEYSLIVIFAVMFITMSLTVDHFFSIENMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFAGVLCAMVLNATGNTFIAIVAAVVAGSVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSDTFIALGSLSMFGVSLPIWVTLVCFIVFGVMLNSTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGSRD

Sequences:

>Translated_338_residues
MQARENLAQQAAKSAAEALIPQASDKQKWWQQITEYSLIVIFAVMFITMSLTVDHFFSIENMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFAGVLCAMVLNATGNTFIAIVAAVVAGSVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSDTFIALGSLSMFGVSLPIWVTLVCFIVFGVMLNSTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGSRD
>Mature_338_residues
MQARENLAQQAAKSAAEALIPQASDKQKWWQQITEYSLIVIFAVMFITMSLTVDHFFSIENMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFAGVLCAMVLNATGNTFIAIVAAVVAGSVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSDTFIALGSLSMFGVSLPIWVTLVCFIVFGVMLNSTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGSRD

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=318, Percent_Identity=56.6037735849057, Blast_Score=338, Evalue=2e-94,
Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=34.4051446945338, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1788896, Length=331, Percent_Identity=31.4199395770393, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=28.8401253918495, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=49.2647058823529, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787793, Length=245, Percent_Identity=33.469387755102, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788471, Length=268, Percent_Identity=36.9402985074627, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082395, Length=244, Percent_Identity=31.1475409836066, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787794, Length=261, Percent_Identity=27.2030651340996, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI145693214, Length=229, Percent_Identity=30.5676855895196, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35634; Mature: 35634

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQARENLAQQAAKSAAEALIPQASDKQKWWQQITEYSLIVIFAVMFITMSLTVDHFFSIE
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFAGVLCAMVLNATGNTFIAIVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
VVAGSVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSHGQAVGVSSDTFIALGSLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCHH
MFGVSLPIWVTLVCFIVFGVMLNSTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCHHHHCCCCEEHHEEEEEEHHH
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ENVMNLMNIDAFYQYLVRGAILLAAVLLDQLKNRGSRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQARENLAQQAAKSAAEALIPQASDKQKWWQQITEYSLIVIFAVMFITMSLTVDHFFSIE
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFAGVLCAMVLNATGNTFIAIVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
VVAGSVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSHGQAVGVSSDTFIALGSLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCHH
MFGVSLPIWVTLVCFIVFGVMLNSTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCHHHHCCCCEEHHEEEEEEHHH
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ENVMNLMNIDAFYQYLVRGAILLAAVLLDQLKNRGSRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]