| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is yceI [C]
Identifier: 186477279
GI number: 186477279
Start: 2853047
End: 2853610
Strand: Reverse
Name: yceI [C]
Synonym: Bphy_2531
Alternate gene names: 186477279
Gene position: 2853610-2853047 (Counterclockwise)
Preceding gene: 186477280
Following gene: 186477278
Centisome position: 82.02
GC content: 60.64
Gene sequence:
>564_bases ATGAAGGTATCGTTCTACCGCTACATGCTCGCTGCGTTCGCGGCGGCGTCGCTGGCCGCGTCGGGCAGCGCGTTTGCGCA AGTCGACGTGGGCAAGAGCACGGTCACGGCGATCTCGAAGCAGATGAACGTGCCCGTCGAAGGCAAGTTCAACAAGTTCA CCGCGCAGATTGCCTTCGACGCGTCGAAACCGGCGGCGGGCACCGCACAGGTCACGGTCGATACGTCGAGCTACGATCTC GGCGATGAAACTTACAACGAACAGGTGCGCGGCAAGGAATGGTTCGATTCGAAGACCTATCCGACGGCGACGTTCGTTTC GAGCGCGATCGCGCCCGCGGGTAACAACCAGTTCAAGGTGACGGGCAAGCTGATTATGAAGGGCAAGTCGCAGACGGTCG TCGTGCCCGTCACGGTGACGAAACAGGGCGCGGCGCAGGTCTATGACGGTGCGGTGACCGTCAAGCGTTCGCAGTTCGAT ATCGGCACGGGAGAGTGGAAAGACACGTCGGTGGTTGCCGACGACGTGACCATCAAGTTCCATATCGTCGCTGCAGGCAA GTGA
Upstream 100 bases:
>100_bases TGCTGGTCGTGCTGCACGTCGTTGCGGCGCTCAAGCATCAGATTGTCAATCGTGACGGCCTGTTGTCGCGCATGATCCCT TTCCTCAAATAAGGACAAAC
Downstream 100 bases:
>100_bases TCCGTGGATTCGTAGCAGTCAGGCAGATAGAAAGGAGAATGAATTGAAACCGATGCGTTTGATTGTGGCTGGCGCGCTGG CGTCGTCGATGGCGGCGGGC
Product: YceI family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 187
Protein sequence:
>187_residues MKVSFYRYMLAAFAAASLAASGSAFAQVDVGKSTVTAISKQMNVPVEGKFNKFTAQIAFDASKPAAGTAQVTVDTSSYDL GDETYNEQVRGKEWFDSKTYPTATFVSSAIAPAGNNQFKVTGKLIMKGKSQTVVVPVTVTKQGAAQVYDGAVTVKRSQFD IGTGEWKDTSVVADDVTIKFHIVAAGK
Sequences:
>Translated_187_residues MKVSFYRYMLAAFAAASLAASGSAFAQVDVGKSTVTAISKQMNVPVEGKFNKFTAQIAFDASKPAAGTAQVTVDTSSYDL GDETYNEQVRGKEWFDSKTYPTATFVSSAIAPAGNNQFKVTGKLIMKGKSQTVVVPVTVTKQGAAQVYDGAVTVKRSQFD IGTGEWKDTSVVADDVTIKFHIVAAGK >Mature_187_residues MKVSFYRYMLAAFAAASLAASGSAFAQVDVGKSTVTAISKQMNVPVEGKFNKFTAQIAFDASKPAAGTAQVTVDTSSYDL GDETYNEQVRGKEWFDSKTYPTATFVSSAIAPAGNNQFKVTGKLIMKGKSQTVVVPVTVTKQGAAQVYDGAVTVKRSQFD IGTGEWKDTSVVADDVTIKFHIVAAGK
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 19845; Mature: 19845
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVSFYRYMLAAFAAASLAASGSAFAQVDVGKSTVTAISKQMNVPVEGKFNKFTAQIAFD CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEEEEE ASKPAAGTAQVTVDTSSYDLGDETYNEQVRGKEWFDSKTYPTATFVSSAIAPAGNNQFKV CCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEE TGKLIMKGKSQTVVVPVTVTKQGAAQVYDGAVTVKRSQFDIGTGEWKDTSVVADDVTIKF EEEEEEECCCCEEEEEEEEECCCCCEEECCEEEEEECEECCCCCCCCCCEEEECCEEEEE HIVAAGK EEEEECC >Mature Secondary Structure MKVSFYRYMLAAFAAASLAASGSAFAQVDVGKSTVTAISKQMNVPVEGKFNKFTAQIAFD CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEEEEE ASKPAAGTAQVTVDTSSYDLGDETYNEQVRGKEWFDSKTYPTATFVSSAIAPAGNNQFKV CCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEE TGKLIMKGKSQTVVVPVTVTKQGAAQVYDGAVTVKRSQFDIGTGEWKDTSVVADDVTIKF EEEEEEECCCCEEEEEEEEECCCCCEEECCEEEEEECEECCCCCCCCCCEEEECCEEEEE HIVAAGK EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA