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The map label for this gene is secD [H]

Identifier: 186477275

GI number: 186477275

Start: 2847790

End: 2849835

Strand: Direct

Name: secD [H]

Synonym: Bphy_2527

Alternate gene names: 186477275

Gene position: 2847790-2849835 (Clockwise)

Preceding gene: 186477274

Following gene: 186477276

Centisome position: 81.85

GC content: 64.86

Gene sequence:

>2046_bases
ATGAATCGTTACCCCCTCTGGAAGTATGCCGTGATGCTGGTGGCGCTCGTCATCGGCCTCGTGTACACGCTGCCCAATTT
CTTCGGCGAAGCGCCGGCGGTGCAGGTGTCGAGCGGCAAGGCAACGGTGAAGCTCGATTCGACCACGCTGTCGCAGGTCG
AAGCGGCGCTCGCATCCAGCCAGATCAAGCCCGACGACGTCACGTTCGACAACTCGACGCAAAACGCGAACATCCGGGTG
CGTCTGAAAGACACCGACACGCAACTGCGCGTGAAGGATCTGCTGCAAAAGGCGCTCAATAGCGACCCGACCGATCCGCA
GTTCATCGTGGCGCTGAACCTGCAAAGCGCGTCGCCGCACTGGCTGACCGCGCTGCACGCGCTGCCCATGTATCTCGGTC
TCGACCTGCGCGGCGGCGTGCACTTCCTGCTGCAAGTCGATATGGCAGGCGCGCTCAACAAGAAACTGGATTCCGACGCA
TCGGATGCGCGCACGCTGCTGCGCGACAAGGGCATCCGCGACGGTGGCGTGAACCGCGTCGGTCAATCGGTCGTCATCAA
TTTCGCGGATCAGGACGTCGCGGAAACAGCGCGCAAGCAGCTGACCGCGGGCGTGTCCGAACTGCAGTGGGCGACGCAGC
CGAATCCGAGCGGCGGCTTCCAGGCGGTGGGCACGTTCACCCCTGCCGTGCAAAAGACGGTGGAGGACGCGGCGCTCAAG
CAGAACATCACGACGCTGCACAACCGCGTCAACGAACTCGGGGTGGCCGAACCCGTCATCCAGCAGCAAGGCTCCGACCG
CATCGTCGTGGAACTGCCGGGCGTGCAGGACACGGCGAAGGCGAAGGACATCATCGGCCGTACGGCGACGCTCGAAGCAC
GCCTCGCCGATCCGAACGGACTGCATCCGAATCCGTCCGACCCGGTCCCGGCGGGCGACGAACTCTTCACGCAAGGCAAC
GCCGTGCCCGTGCTGCTGCGCAAGTCGGTGATCTTCACTGGCGACCGCATCATCGACGCATCGGCGGGCTTCGACGAACA
CCAGCGTCCGTCCGTCAACATCCGTCTCGACTCGGCAGGCGGCCGTGCGGTACGCAGCGTGTCGCGCGACAACATCGGCA
AGCCGATGGCGATGGTGCTGTTCGAAAAGGGCAAGGGCGAAGTGCTGACGGTCGCGACGATCCAGTCGGAACTAGGCGAC
CGCTTCCAGATCACGGGCCAGCCGACGCCGCAAGCGGCAACCGATCTCGCACTGCTGCTGCGCGCCGGTTCGCTCGCGGC
ACCGATGGACATCATCGAAGAGCGCACGATCGGCCCGAGCCTCGGCGCGGACAATATCAAGAAGGGCTTCGATTCCGTCG
TGTACGGCTTCATCGCGATCGCGGCCTTCATGATCGCGTACTACATGCTGTTCGGCCTGATCTCGATGATCGCGCTGTCG
GTGAACCTGCTGCTGCTCATCGCCGTCCTGTCGATGCTGCAGGCCACGCTCACCTTGCCGGGCATCGCCGCTATCGCGCT
TGCGCTCGGTATGGCCATCGACGCCAACGTGCTGATCAACGAGCGCGTTCGTGAAGAACTGCGCAACGGCGCGCCGCCGC
AACTGGCCATCCAGAACGGCTACGCGCATGCATGGGCGACGATTCTCGACTCGAACGTGACTACCCTGATCGCCGGTCTC
GCGCTGCTCGCATTCGGCTCCGGCCCGGTGCGCGGCTTCGCGGTCGTGCACTGCATCGGCATTCTGACGTCGATGTTCTC
GGCGGTGTTCTTCTCGCGCGGTCTGGTGAACCTGTGGTACGGCGGCAAGAAAAAGCTGAAGTCGCTGGCTGTCGGCCAGG
TGTGGAAGCCCGCGGCAGTGGAAGGCGCAACGGCTTACCTCGACAACGCCGACGAGCAGACCGACACGGCTGCGCAGATC
GCCGCAACCAAGGCGCCGAAGCAGAGGACCAAGGCTTCGGCGGGCGCGCAAGCGCGTGCGGGCAAGCCGACGCTGCGCAA
CCGCAACGCGCCGGGTGGCACGAACAAGCCGGGTTCGACCCGCTGA

Upstream 100 bases:

>100_bases
GCGCGGCCTCGCGCCGAGCGGAATCTCTATCCGCGCTTCCGCTCGCCGCGCTCATCGCCGGACGCATCGCTTTCAAGCCA
ACCTCCCGTTGGACCACTCC

Downstream 100 bases:

>100_bases
GTCCGGAGAAAGAGAACATGGAATTTTTCCGCATCCGTAAAGACATTCCGTTCATGCAGCGCGCGTTGGTCTTCAACGCG
ATCTCGCTGCTGACGTTCAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MNRYPLWKYAVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVKLDSTTLSQVEAALASSQIKPDDVTFDNSTQNANIRV
RLKDTDTQLRVKDLLQKALNSDPTDPQFIVALNLQSASPHWLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDA
SDARTLLRDKGIRDGGVNRVGQSVVINFADQDVAETARKQLTAGVSELQWATQPNPSGGFQAVGTFTPAVQKTVEDAALK
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPNGLHPNPSDPVPAGDELFTQGN
AVPVLLRKSVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGD
RFQITGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFDSVVYGFIAIAAFMIAYYMLFGLISMIALS
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGL
ALLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGGKKKLKSLAVGQVWKPAAVEGATAYLDNADEQTDTAAQI
AATKAPKQRTKASAGAQARAGKPTLRNRNAPGGTNKPGSTR

Sequences:

>Translated_681_residues
MNRYPLWKYAVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVKLDSTTLSQVEAALASSQIKPDDVTFDNSTQNANIRV
RLKDTDTQLRVKDLLQKALNSDPTDPQFIVALNLQSASPHWLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDA
SDARTLLRDKGIRDGGVNRVGQSVVINFADQDVAETARKQLTAGVSELQWATQPNPSGGFQAVGTFTPAVQKTVEDAALK
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPNGLHPNPSDPVPAGDELFTQGN
AVPVLLRKSVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGD
RFQITGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFDSVVYGFIAIAAFMIAYYMLFGLISMIALS
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGL
ALLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGGKKKLKSLAVGQVWKPAAVEGATAYLDNADEQTDTAAQI
AATKAPKQRTKASAGAQARAGKPTLRNRNAPGGTNKPGSTR
>Mature_681_residues
MNRYPLWKYAVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVKLDSTTLSQVEAALASSQIKPDDVTFDNSTQNANIRV
RLKDTDTQLRVKDLLQKALNSDPTDPQFIVALNLQSASPHWLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDA
SDARTLLRDKGIRDGGVNRVGQSVVINFADQDVAETARKQLTAGVSELQWATQPNPSGGFQAVGTFTPAVQKTVEDAALK
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPNGLHPNPSDPVPAGDELFTQGN
AVPVLLRKSVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGD
RFQITGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFDSVVYGFIAIAAFMIAYYMLFGLISMIALS
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGL
ALLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGGKKKLKSLAVGQVWKPAAVEGATAYLDNADEQTDTAAQI
AATKAPKQRTKASAGAQARAGKPTLRNRNAPGGTNKPGSTR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=631, Percent_Identity=45.9587955625991, Blast_Score=516, Evalue=1e-147,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 72408; Mature: 72408

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYAVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVKLDSTTLSQVEAALASS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHHHHHHHHC
QIKPDDVTFDNSTQNANIRVRLKDTDTQLRVKDLLQKALNSDPTDPQFIVALNLQSASPH
CCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDKGIRDGGVNRV
HHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHC
GQSVVINFADQDVAETARKQLTAGVSELQWATQPNPSGGFQAVGTFTPAVQKTVEDAALK
CCEEEEECCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHH
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPNG
HHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCC
LHPNPSDPVPAGDELFTQGNAVPVLLRKSVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG
CCCCCCCCCCCCHHHHCCCCCEEEEEECCEEEECCEEEECCCCCCCCCCCCEEEEEECCC
GRAVRSVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAATDLALLL
CHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHH
RAGSLAAPMDIIEERTIGPSLGADNIKKGFDSVVYGFIAIAAFMIAYYMLFGLISMIALS
HCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECC
YAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWY
CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
GGKKKLKSLAVGQVWKPAAVEGATAYLDNADEQTDTAAQIAATKAPKQRTKASAGAQARA
CCHHHHHHHHHCCCCCCCHHCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCC
GKPTLRNRNAPGGTNKPGSTR
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRYPLWKYAVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVKLDSTTLSQVEAALASS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHHHHHHHHC
QIKPDDVTFDNSTQNANIRVRLKDTDTQLRVKDLLQKALNSDPTDPQFIVALNLQSASPH
CCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDKGIRDGGVNRV
HHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHC
GQSVVINFADQDVAETARKQLTAGVSELQWATQPNPSGGFQAVGTFTPAVQKTVEDAALK
CCEEEEECCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHH
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPNG
HHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCC
LHPNPSDPVPAGDELFTQGNAVPVLLRKSVIFTGDRIIDASAGFDEHQRPSVNIRLDSAG
CCCCCCCCCCCCHHHHCCCCCEEEEEECCEEEECCEEEECCCCCCCCCCCCEEEEEECCC
GRAVRSVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAATDLALLL
CHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHH
RAGSLAAPMDIIEERTIGPSLGADNIKKGFDSVVYGFIAIAAFMIAYYMLFGLISMIALS
HCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECC
YAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWY
CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
GGKKKLKSLAVGQVWKPAAVEGATAYLDNADEQTDTAAQIAATKAPKQRTKASAGAQARA
CCHHHHHHHHHCCCCCCCHHCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCC
GKPTLRNRNAPGGTNKPGSTR
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]