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The map label for this gene is rarD [H]

Identifier: 186477164

GI number: 186477164

Start: 2714026

End: 2714910

Strand: Reverse

Name: rarD [H]

Synonym: Bphy_2413

Alternate gene names: 186477164

Gene position: 2714910-2714026 (Counterclockwise)

Preceding gene: 186477166

Following gene: 186477156

Centisome position: 78.03

GC content: 64.18

Gene sequence:

>885_bases
ATGAATCCCGGCGTCGCCTACGCATTGCTCGCATTTACTCTGTGGGGACTGTTTCCCGTCTACTTCAAGTCGCTGCATCA
GATCTCGCCCGTGGAAATGCTCGCGCACCGGATGGTGTGGTCGATGCTGTTTCTCTTCATCGTGTTGACGGTGCGGCAGC
AGTGGCGGTGGCTTGCGCCCGTGCTGCGAGACCGGAACCTGCTCACGCGCTTTGCCGCGAGTGCGCTGTTGCTGTCGACG
AACTGGGGCATCTATATCTGGGCCGTCAACGCGGGGCATATCGTCGAGGCGAGCCTCGGCTACTTTGTGAATCCGCTGAT
CAATGTGCTGTTCGGCCTCGCGTTTCTCGGAGAGCGTCTGCGGCGCGTGCAGTGGGTGTCCGTCGCGGTCGCCACGTGCG
GCGTGCTATGGCTCACCTGGCAAAACGGCCATCCGCCGTGGATCAGCCTCGCGCTTGCCTTCAGCTTCGCCGGCTATGGC
CTGTTGCGCAAGACGGCGCAGCTCGGCGCGCTTGAAGGGCTGACACTCGAAACGGTGCTGCTGTTCCCGGTCGCAGTGCT
GTATCTGTTCTTCGCGTCGTCGCACGGGCAAAGCGGATTCGGCGCGGCGTCCGTCGGCGTGAAGGTGCTGCTCGCGCTGG
CCGGGCCGATCACGGCTGTGCCGTTGCTGCTGTTCGCGGCGGGCGCGCGGCGCATTCCGCTGTCGATGCTCGGACTGATT
CAGTACGTCACCCCCTCGCTGCAACTGCTGATCGGCGTGCTGATCTATCGCGAGCCTTTCGGGCAGACGCAGTTGGTCGG
CTATGGCGCGATCTGGATCGCGCTCGCGCTGTATTCGCTCGATGGCTTGTGGCGCGCGCGGTTTGCGCGCGCCCAGGCGC
AATGA

Upstream 100 bases:

>100_bases
CCAGGCTGGCCGCGTCTGGCTCCCGCCGCCTTGGCCGAAGCTTTTCCCGCTTGTTTTTCGCGCGGTTTTTCCGCGCCCTT
CCATCCGCAGGCCGATAAAA

Downstream 100 bases:

>100_bases
TCAGATCGCGCGTTTGATCTCGACGACGCCGAACGCTGCGAGCGCGAGGCCTGCGATACGGTCGATGATCACACGCAGTT
TGTGACCGATTGCATGCCGC

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MNPGVAYALLAFTLWGLFPVYFKSLHQISPVEMLAHRMVWSMLFLFIVLTVRQQWRWLAPVLRDRNLLTRFAASALLLST
NWGIYIWAVNAGHIVEASLGYFVNPLINVLFGLAFLGERLRRVQWVSVAVATCGVLWLTWQNGHPPWISLALAFSFAGYG
LLRKTAQLGALEGLTLETVLLFPVAVLYLFFASSHGQSGFGAASVGVKVLLALAGPITAVPLLLFAAGARRIPLSMLGLI
QYVTPSLQLLIGVLIYREPFGQTQLVGYGAIWIALALYSLDGLWRARFARAQAQ

Sequences:

>Translated_294_residues
MNPGVAYALLAFTLWGLFPVYFKSLHQISPVEMLAHRMVWSMLFLFIVLTVRQQWRWLAPVLRDRNLLTRFAASALLLST
NWGIYIWAVNAGHIVEASLGYFVNPLINVLFGLAFLGERLRRVQWVSVAVATCGVLWLTWQNGHPPWISLALAFSFAGYG
LLRKTAQLGALEGLTLETVLLFPVAVLYLFFASSHGQSGFGAASVGVKVLLALAGPITAVPLLLFAAGARRIPLSMLGLI
QYVTPSLQLLIGVLIYREPFGQTQLVGYGAIWIALALYSLDGLWRARFARAQAQ
>Mature_294_residues
MNPGVAYALLAFTLWGLFPVYFKSLHQISPVEMLAHRMVWSMLFLFIVLTVRQQWRWLAPVLRDRNLLTRFAASALLLST
NWGIYIWAVNAGHIVEASLGYFVNPLINVLFGLAFLGERLRRVQWVSVAVATCGVLWLTWQNGHPPWISLALAFSFAGYG
LLRKTAQLGALEGLTLETVLLFPVAVLYLFFASSHGQSGFGAASVGVKVLLALAGPITAVPLLLFAAGARRIPLSMLGLI
QYVTPSLQLLIGVLIYREPFGQTQLVGYGAIWIALALYSLDGLWRARFARAQAQ

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=284, Percent_Identity=43.3098591549296, Blast_Score=247, Evalue=5e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32458; Mature: 32458

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPGVAYALLAFTLWGLFPVYFKSLHQISPVEMLAHRMVWSMLFLFIVLTVRQQWRWLAP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRDRNLLTRFAASALLLSTNWGIYIWAVNAGHIVEASLGYFVNPLINVLFGLAFLGERL
HHHCHHHHHHHHHHHHHEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RRVQWVSVAVATCGVLWLTWQNGHPPWISLALAFSFAGYGLLRKTAQLGALEGLTLETVL
HHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LFPVAVLYLFFASSHGQSGFGAASVGVKVLLALAGPITAVPLLLFAAGARRIPLSMLGLI
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHH
QYVTPSLQLLIGVLIYREPFGQTQLVGYGAIWIALALYSLDGLWRARFARAQAQ
HHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPGVAYALLAFTLWGLFPVYFKSLHQISPVEMLAHRMVWSMLFLFIVLTVRQQWRWLAP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRDRNLLTRFAASALLLSTNWGIYIWAVNAGHIVEASLGYFVNPLINVLFGLAFLGERL
HHHCHHHHHHHHHHHHHEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RRVQWVSVAVATCGVLWLTWQNGHPPWISLALAFSFAGYGLLRKTAQLGALEGLTLETVL
HHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LFPVAVLYLFFASSHGQSGFGAASVGVKVLLALAGPITAVPLLLFAAGARRIPLSMLGLI
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHH
QYVTPSLQLLIGVLIYREPFGQTQLVGYGAIWIALALYSLDGLWRARFARAQAQ
HHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]