| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186477138
Identifier: 186477138
GI number: 186477138
Start: 2682825
End: 2683451
Strand: Reverse
Name: 186477138
Synonym: Bphy_2387
Alternate gene names: NA
Gene position: 2683451-2682825 (Counterclockwise)
Preceding gene: 186477139
Following gene: 186477137
Centisome position: 77.13
GC content: 55.34
Gene sequence:
>627_bases TTGAGGCTGCGGACCCTATTTGTCACAACGGCATCGATCGCTTGCTGCGGATGCTTGCATTCACCACCGAGCTATCCGGG CGCAGGTGGCAAGAACCTCGAACCTGCGTCCTACGCATCAAGTTTATGTCCAGATCTCAGCGGAAGATATGAGGGACGTG GATTGCTGGTGGACGGCGATACCGTTACCCGGCAGGCACAGCAGAGCCTGCGTATCGACTATGCATTTCCTTTCAAGGAT GCCCTTGAGGCTGGTGAGCTTCAGGCAGCGGAAACGGGTAGATACCCTCAGTCCGGAGCAATCAACTGGAGCGACCGGAG GGCGACTGTGACGCTTGCCTTTGCTAGCGGACAGCCTGTCGAGTACATCTCTTCGATGGAGGACAAAGATCGATTCGTGT GCACGGGTCGAAACGGAAAGATTGTATGGGGTGGCGGCAGTGGAACGGGGCGCTCGGAGTTCGGCCCGAACAGTACAGAC TCATCGGCTGCGCTTTACCTCGACGAGCATGGCGACCTGATGGTTGAGGACCACATGCAAGTTCACATGAGTATGCTGTT CAGTGCAATCCCGACGGGAACAGCAAAGCATTACTCGATCTATAGATTTAAACGCATATCGGACTGA
Upstream 100 bases:
>100_bases ACCGTTGACAAGCCCTATCATTGACATTTGCGACAGGCGCACTTGGAAGAGCACGATCGAGGATTCCCGGTTTGTCGAGC GCCATAAAGAAGGACCAGAA
Downstream 100 bases:
>100_bases CCGGCGCAATTTGCGGATACTGCTCCAACTGATTGTCAGATGGACACGCCGAGAATTTCTTGTGTTCATTTGTCTCGTGA AATGTCTGCTCTGGAGCAGA
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MRLRTLFVTTASIACCGCLHSPPSYPGAGGKNLEPASYASSLCPDLSGRYEGRGLLVDGDTVTRQAQQSLRIDYAFPFKD ALEAGELQAAETGRYPQSGAINWSDRRATVTLAFASGQPVEYISSMEDKDRFVCTGRNGKIVWGGGSGTGRSEFGPNSTD SSAALYLDEHGDLMVEDHMQVHMSMLFSAIPTGTAKHYSIYRFKRISD
Sequences:
>Translated_208_residues MRLRTLFVTTASIACCGCLHSPPSYPGAGGKNLEPASYASSLCPDLSGRYEGRGLLVDGDTVTRQAQQSLRIDYAFPFKD ALEAGELQAAETGRYPQSGAINWSDRRATVTLAFASGQPVEYISSMEDKDRFVCTGRNGKIVWGGGSGTGRSEFGPNSTD SSAALYLDEHGDLMVEDHMQVHMSMLFSAIPTGTAKHYSIYRFKRISD >Mature_208_residues MRLRTLFVTTASIACCGCLHSPPSYPGAGGKNLEPASYASSLCPDLSGRYEGRGLLVDGDTVTRQAQQSLRIDYAFPFKD ALEAGELQAAETGRYPQSGAINWSDRRATVTLAFASGQPVEYISSMEDKDRFVCTGRNGKIVWGGGSGTGRSEFGPNSTD SSAALYLDEHGDLMVEDHMQVHMSMLFSAIPTGTAKHYSIYRFKRISD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22536; Mature: 22536
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLRTLFVTTASIACCGCLHSPPSYPGAGGKNLEPASYASSLCPDLSGRYEGRGLLVDGD CCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECH TVTRQAQQSLRIDYAFPFKDALEAGELQAAETGRYPQSGAINWSDRRATVTLAFASGQPV HHHHHHHHHEEEEEECCHHHHHCCCCEEHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCH EYISSMEDKDRFVCTGRNGKIVWGGGSGTGRSEFGPNSTDSSAALYLDEHGDLMVEDHMQ HHHHCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEHHHHH VHMSMLFSAIPTGTAKHYSIYRFKRISD HHHHHHHHHCCCCCCCCEEEEEEEECCC >Mature Secondary Structure MRLRTLFVTTASIACCGCLHSPPSYPGAGGKNLEPASYASSLCPDLSGRYEGRGLLVDGD CCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECH TVTRQAQQSLRIDYAFPFKDALEAGELQAAETGRYPQSGAINWSDRRATVTLAFASGQPV HHHHHHHHHEEEEEECCHHHHHCCCCEEHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCH EYISSMEDKDRFVCTGRNGKIVWGGGSGTGRSEFGPNSTDSSAALYLDEHGDLMVEDHMQ HHHHCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEHHHHH VHMSMLFSAIPTGTAKHYSIYRFKRISD HHHHHHHHHCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA