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The map label for this gene is yfdE [H]

Identifier: 186477135

GI number: 186477135

Start: 2678132

End: 2680630

Strand: Reverse

Name: yfdE [H]

Synonym: Bphy_2384

Alternate gene names: 186477135

Gene position: 2680630-2678132 (Counterclockwise)

Preceding gene: 186477136

Following gene: 186477134

Centisome position: 77.05

GC content: 61.58

Gene sequence:

>2499_bases
ATGGGAAATAGCAAGCAACTGCCGTTCAGCGGCGTAAAAGTCATCGACTTCGGCCAGTATATTGCGGGCCCGGCCGTGGC
AATGATTCTTGCGGATCTTGGCGCTACTGTAATTCATGTCGATCCTCCGAATGGGCCGCTTTGGGATAGTCCGGCCAATG
CCGTTCTGAACCGTAACAAGCATTGCCTGAGGCTCGACCTGAAGTCTGAGCGTGGTTTGGAAGAAGCGAAAAGCCTCATC
AATCGCGCGGATATCGTCGTCGAGAACTTCCGGCCGGGCGTAATGGCGCGGCTTGGCCTGCACTTCGCAAAGCTGCGTGA
GAAAAGCCCTCAACTGATCGCCCTTTCGATGCCGGGTTTCGCCAGCAATGACCAGTTGCGGCGCGAATGGCGCGCGTTCG
AGCCCATCATCGCTTCGGCATCCGGCGTATTCACGGACATGGGACAGAACCGCGTATTGATGGGCGTCAACCCGAGTTTC
TCACCTTTGCCGCTCGCCTCCGCCTACGGCACGATGCTGGGTGTATCCGCCGTCGCTCTGGCTTTGCAGGCGCGGCAGCG
CACCGGCCTCGGAGATGAAATTGAAGTCCCCCTGGCTTCAGCCGTGATGGAGGGGCTTTCGTACAACTCAATCCATATTG
AAGGCTATCCTGAGCGATACAAGACCCTGCGTGAAAAGGAGATTGAGCGGCGCCGGTCGAATAGTCTGCCGATGAATCTG
TCGTATGAGGCCCTGCAGGACTATCTGGATCCCTTCTATCGCACCTACGAGTGCGCCGACGGCCGCAAATTTTACGCGGT
GTGTCCGTCGCACCGCTCGCACGCGCGGCGCTGCCTGCAGGCGATGGGGCTGTACGAGGAAATGCTGGCGGCCGGATTGC
CGCTTGTAGACGACCCATATCTGCCGATTTCCGAATGGGATGGGGACGCTTCGCTAGGAGTCTATCCGTTGCCCGAGCAT
TGGGCCAAGCGCATTTCCGCGCGCATGAAGGAAGTCTTCCTGACGAAAACGGCAGCGGAGTGGGAGAAGATTTTCGGTGA
AGGGGGATTCCCGGGCGCTGCGCATCGCACCACGCGAGAGTGGCTGCACGACGATCATGCGAATGCCGCTGGTCTGGTCC
TTGACGTCGAAGACTTCGAGTATGGCGCGATGAAACAGCCCGGTCCGGTCTCATGGCTCGAGGACTGCGCCGAACTGATG
CTCTCACCGGCGTCACGCCGCATAGTGACCTTCCAGGAAGCCGCGGCCATTCTGGACGAGCAGGGGAGCGCTGGAGTGCC
TCCCCCGTCTGAAAACTGCTCGAAGGGGTGGCTCGAAGGGGTACGCGTCCTCGACTTGACCAACGTGATTGCCGGGCCGC
ACTCAACCTCGTTTCTCGGCCGGTTCGGTGCCGACGTCATCAAACTCGACCCTGTCAGACCGAATTATGACCCGTGGAAT
ACGGTGGTCTTCGGGATGTCTTCCGCCCGCGGCAAGCGGAGCGTGCTCGTCGACCTGAATCACCCGGATGGACGTGAGGT
GTTCAACCGGCTTGCACGGTCCGTCGACGTGATCGTAATGAACGCGCCGGATCGGCAACTGGCACCGTTGGGGCTGGACG
AAGCGAGTCTACGTTCTGTCAATCCGGGCGTGATCTTCTGCCAACTGGACTGCTTTGGCGGTCCGCGGCGCGGACCGCGG
ACCGACTATCTCGGCTACGACGATCTGATCCAGGCGTGTACCGGAATCATGGCGCGGTTCGGTGGTGGCATGCAGACGCC
GGAGGAGCACGCGCACGTCGGGACGATCGATGTCATGTGCGGATTCGCGGCAGCGCTGGGCGTTGCCGCCGCCCTGTACC
GCAAGGCCAGAACGGGCGAATCCGGGCGGGCCAGAACTTCCCTCGCGGCGCTCGGCAATCTGGTGCAGGTTCCGTTCTCG
TACGACTACGCAAACCGCCGCCCGTTCGATGAGCCGTCCGGTCGCGACGCACAAGGCTTCACGGCGATGTCCCGCTTCTA
CCGCGCTGCTGACAACTGGATCTACGTGGATACCAGCGAGCGCGAACTGGGCAAGCTCGATCGGGTGGACGGTCTGAAAG
GGATCGCTGCCGCCGAGGATCCGGCTGCCTTTCTCGCGTCCGCGCTCGACACAGCCTCCGCCGGAACCTGGCAGACCCGA
TTTCAGGCCGCCAACATCGCTGCGGCGGTGCCGGACAACATCGGCAATCTGCGCCGGCACAACAGCCGGCCTTGCGATGA
TCGTCCCGGGATCGACAACGGTAGCTATTCATTCAGCGTCTATGCGGACCATCCGAGCGGTCGATGCGTCACGCAACTCG
ATCCCTTTGCGATCCGCCCGCGTCACGCCCGGATTCGCGCGCTGCCGTCGGCTGAGAAATTCGGTGCGTCGACGCTCGCC
GTGTTGCGCGAGTTCGGATATAGCGATGCCGAGATCGAAATGCTGATGGCGCGGCATGCCGTTGGCGATAGCTGGTCCGA
AGAGTATCTGCCCAGCTAG

Upstream 100 bases:

>100_bases
CAGGCGTCTCGGTGCTGATGACTGACGGTGACAGGTCTATCCACAACATGACGATCGACGGTCGCATGATGCGACGGGTC
TGGAGGCGACTTGGCAGACT

Downstream 100 bases:

>100_bases
ACGCATTTCTCCGTTTCGCAGCGGCTACAAGTCAAGCATTCCCCAGCGAAGCGTGGTGCAAGCCGAACGTGGCAGCAGAC
GACGAAAAGCTTGCGCGGGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 832; Mature: 831

Protein sequence:

>832_residues
MGNSKQLPFSGVKVIDFGQYIAGPAVAMILADLGATVIHVDPPNGPLWDSPANAVLNRNKHCLRLDLKSERGLEEAKSLI
NRADIVVENFRPGVMARLGLHFAKLREKSPQLIALSMPGFASNDQLRREWRAFEPIIASASGVFTDMGQNRVLMGVNPSF
SPLPLASAYGTMLGVSAVALALQARQRTGLGDEIEVPLASAVMEGLSYNSIHIEGYPERYKTLREKEIERRRSNSLPMNL
SYEALQDYLDPFYRTYECADGRKFYAVCPSHRSHARRCLQAMGLYEEMLAAGLPLVDDPYLPISEWDGDASLGVYPLPEH
WAKRISARMKEVFLTKTAAEWEKIFGEGGFPGAAHRTTREWLHDDHANAAGLVLDVEDFEYGAMKQPGPVSWLEDCAELM
LSPASRRIVTFQEAAAILDEQGSAGVPPPSENCSKGWLEGVRVLDLTNVIAGPHSTSFLGRFGADVIKLDPVRPNYDPWN
TVVFGMSSARGKRSVLVDLNHPDGREVFNRLARSVDVIVMNAPDRQLAPLGLDEASLRSVNPGVIFCQLDCFGGPRRGPR
TDYLGYDDLIQACTGIMARFGGGMQTPEEHAHVGTIDVMCGFAAALGVAAALYRKARTGESGRARTSLAALGNLVQVPFS
YDYANRRPFDEPSGRDAQGFTAMSRFYRAADNWIYVDTSERELGKLDRVDGLKGIAAAEDPAAFLASALDTASAGTWQTR
FQAANIAAAVPDNIGNLRRHNSRPCDDRPGIDNGSYSFSVYADHPSGRCVTQLDPFAIRPRHARIRALPSAEKFGASTLA
VLREFGYSDAEIEMLMARHAVGDSWSEEYLPS

Sequences:

>Translated_832_residues
MGNSKQLPFSGVKVIDFGQYIAGPAVAMILADLGATVIHVDPPNGPLWDSPANAVLNRNKHCLRLDLKSERGLEEAKSLI
NRADIVVENFRPGVMARLGLHFAKLREKSPQLIALSMPGFASNDQLRREWRAFEPIIASASGVFTDMGQNRVLMGVNPSF
SPLPLASAYGTMLGVSAVALALQARQRTGLGDEIEVPLASAVMEGLSYNSIHIEGYPERYKTLREKEIERRRSNSLPMNL
SYEALQDYLDPFYRTYECADGRKFYAVCPSHRSHARRCLQAMGLYEEMLAAGLPLVDDPYLPISEWDGDASLGVYPLPEH
WAKRISARMKEVFLTKTAAEWEKIFGEGGFPGAAHRTTREWLHDDHANAAGLVLDVEDFEYGAMKQPGPVSWLEDCAELM
LSPASRRIVTFQEAAAILDEQGSAGVPPPSENCSKGWLEGVRVLDLTNVIAGPHSTSFLGRFGADVIKLDPVRPNYDPWN
TVVFGMSSARGKRSVLVDLNHPDGREVFNRLARSVDVIVMNAPDRQLAPLGLDEASLRSVNPGVIFCQLDCFGGPRRGPR
TDYLGYDDLIQACTGIMARFGGGMQTPEEHAHVGTIDVMCGFAAALGVAAALYRKARTGESGRARTSLAALGNLVQVPFS
YDYANRRPFDEPSGRDAQGFTAMSRFYRAADNWIYVDTSERELGKLDRVDGLKGIAAAEDPAAFLASALDTASAGTWQTR
FQAANIAAAVPDNIGNLRRHNSRPCDDRPGIDNGSYSFSVYADHPSGRCVTQLDPFAIRPRHARIRALPSAEKFGASTLA
VLREFGYSDAEIEMLMARHAVGDSWSEEYLPS
>Mature_831_residues
GNSKQLPFSGVKVIDFGQYIAGPAVAMILADLGATVIHVDPPNGPLWDSPANAVLNRNKHCLRLDLKSERGLEEAKSLIN
RADIVVENFRPGVMARLGLHFAKLREKSPQLIALSMPGFASNDQLRREWRAFEPIIASASGVFTDMGQNRVLMGVNPSFS
PLPLASAYGTMLGVSAVALALQARQRTGLGDEIEVPLASAVMEGLSYNSIHIEGYPERYKTLREKEIERRRSNSLPMNLS
YEALQDYLDPFYRTYECADGRKFYAVCPSHRSHARRCLQAMGLYEEMLAAGLPLVDDPYLPISEWDGDASLGVYPLPEHW
AKRISARMKEVFLTKTAAEWEKIFGEGGFPGAAHRTTREWLHDDHANAAGLVLDVEDFEYGAMKQPGPVSWLEDCAELML
SPASRRIVTFQEAAAILDEQGSAGVPPPSENCSKGWLEGVRVLDLTNVIAGPHSTSFLGRFGADVIKLDPVRPNYDPWNT
VVFGMSSARGKRSVLVDLNHPDGREVFNRLARSVDVIVMNAPDRQLAPLGLDEASLRSVNPGVIFCQLDCFGGPRRGPRT
DYLGYDDLIQACTGIMARFGGGMQTPEEHAHVGTIDVMCGFAAALGVAAALYRKARTGESGRARTSLAALGNLVQVPFSY
DYANRRPFDEPSGRDAQGFTAMSRFYRAADNWIYVDTSERELGKLDRVDGLKGIAAAEDPAAFLASALDTASAGTWQTRF
QAANIAAAVPDNIGNLRRHNSRPCDDRPGIDNGSYSFSVYADHPSGRCVTQLDPFAIRPRHARIRALPSAEKFGASTLAV
LREFGYSDAEIEMLMARHAVGDSWSEEYLPS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=377, Percent_Identity=29.4429708222812, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI266456254, Length=377, Percent_Identity=28.3819628647215, Blast_Score=109, Evalue=1e-23,
Organism=Homo sapiens, GI266458397, Length=266, Percent_Identity=32.3308270676692, Blast_Score=97, Evalue=8e-20,
Organism=Homo sapiens, GI266458393, Length=266, Percent_Identity=32.3308270676692, Blast_Score=97, Evalue=9e-20,
Organism=Homo sapiens, GI300863124, Length=193, Percent_Identity=32.6424870466321, Blast_Score=93, Evalue=1e-18,
Organism=Homo sapiens, GI300863128, Length=193, Percent_Identity=32.6424870466321, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI300863126, Length=150, Percent_Identity=34.6666666666667, Blast_Score=87, Evalue=9e-17,
Organism=Homo sapiens, GI266458395, Length=122, Percent_Identity=36.8852459016393, Blast_Score=75, Evalue=3e-13,
Organism=Homo sapiens, GI42822893, Length=122, Percent_Identity=36.8852459016393, Blast_Score=75, Evalue=4e-13,
Organism=Escherichia coli, GI87082093, Length=436, Percent_Identity=24.5412844036697, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788717, Length=207, Percent_Identity=29.4685990338164, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=342, Percent_Identity=24.8538011695906, Blast_Score=84, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=272, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24585488, Length=392, Percent_Identity=27.0408163265306, Blast_Score=103, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24648431, Length=221, Percent_Identity=31.2217194570136, Blast_Score=96, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 91145; Mature: 91014

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSKQLPFSGVKVIDFGQYIAGPAVAMILADLGATVIHVDPPNGPLWDSPANAVLNRNK
CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCC
HCLRLDLKSERGLEEAKSLINRADIVVENFRPGVMARLGLHFAKLREKSPQLIALSMPGF
CEEEEECCHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
ASNDQLRREWRAFEPIIASASGVFTDMGQNRVLMGVNPSFSPLPLASAYGTMLGVSAVAL
CCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
ALQARQRTGLGDEIEVPLASAVMEGLSYNSIHIEGYPERYKTLREKEIERRRSNSLPMNL
HHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC
SYEALQDYLDPFYRTYECADGRKFYAVCPSHRSHARRCLQAMGLYEEMLAAGLPLVDDPY
CHHHHHHHHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LPISEWDGDASLGVYPLPEHWAKRISARMKEVFLTKTAAEWEKIFGEGGFPGAAHRTTRE
CCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
WLHDDHANAAGLVLDVEDFEYGAMKQPGPVSWLEDCAELMLSPASRRIVTFQEAAAILDE
HHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHC
QGSAGVPPPSENCSKGWLEGVRVLDLTNVIAGPHSTSFLGRFGADVIKLDPVRPNYDPWN
CCCCCCCCCCCCCHHHHHHCCHHEEHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCCCC
TVVFGMSSARGKRSVLVDLNHPDGREVFNRLARSVDVIVMNAPDRQLAPLGLDEASLRSV
EEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHCCC
NPGVIFCQLDCFGGPRRGPRTDYLGYDDLIQACTGIMARFGGGMQTPEEHAHVGTIDVMC
CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHH
GFAAALGVAAALYRKARTGESGRARTSLAALGNLVQVPFSYDYANRRPFDEPSGRDAQGF
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHH
TAMSRFYRAADNWIYVDTSERELGKLDRVDGLKGIAAAEDPAAFLASALDTASAGTWQTR
HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
FQAANIAAAVPDNIGNLRRHNSRPCDDRPGIDNGSYSFSVYADHPSGRCVTQLDPFAIRP
HHHCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCEECC
RHARIRALPSAEKFGASTLAVLREFGYSDAEIEMLMARHAVGDSWSEEYLPS
CCHHEEECCCHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure 
GNSKQLPFSGVKVIDFGQYIAGPAVAMILADLGATVIHVDPPNGPLWDSPANAVLNRNK
CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCC
HCLRLDLKSERGLEEAKSLINRADIVVENFRPGVMARLGLHFAKLREKSPQLIALSMPGF
CEEEEECCHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
ASNDQLRREWRAFEPIIASASGVFTDMGQNRVLMGVNPSFSPLPLASAYGTMLGVSAVAL
CCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
ALQARQRTGLGDEIEVPLASAVMEGLSYNSIHIEGYPERYKTLREKEIERRRSNSLPMNL
HHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC
SYEALQDYLDPFYRTYECADGRKFYAVCPSHRSHARRCLQAMGLYEEMLAAGLPLVDDPY
CHHHHHHHHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LPISEWDGDASLGVYPLPEHWAKRISARMKEVFLTKTAAEWEKIFGEGGFPGAAHRTTRE
CCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
WLHDDHANAAGLVLDVEDFEYGAMKQPGPVSWLEDCAELMLSPASRRIVTFQEAAAILDE
HHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHC
QGSAGVPPPSENCSKGWLEGVRVLDLTNVIAGPHSTSFLGRFGADVIKLDPVRPNYDPWN
CCCCCCCCCCCCCHHHHHHCCHHEEHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCCCC
TVVFGMSSARGKRSVLVDLNHPDGREVFNRLARSVDVIVMNAPDRQLAPLGLDEASLRSV
EEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHCCC
NPGVIFCQLDCFGGPRRGPRTDYLGYDDLIQACTGIMARFGGGMQTPEEHAHVGTIDVMC
CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHH
GFAAALGVAAALYRKARTGESGRARTSLAALGNLVQVPFSYDYANRRPFDEPSGRDAQGF
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHH
TAMSRFYRAADNWIYVDTSERELGKLDRVDGLKGIAAAEDPAAFLASALDTASAGTWQTR
HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
FQAANIAAAVPDNIGNLRRHNSRPCDDRPGIDNGSYSFSVYADHPSGRCVTQLDPFAIRP
HHHCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCEECC
RHARIRALPSAEKFGASTLAVLREFGYSDAEIEMLMARHAVGDSWSEEYLPS
CCHHEEECCCHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]