| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186477019
Identifier: 186477019
GI number: 186477019
Start: 2542149
End: 2543411
Strand: Direct
Name: 186477019
Synonym: Bphy_2268
Alternate gene names: NA
Gene position: 2542149-2543411 (Clockwise)
Preceding gene: 186477014
Following gene: 186477020
Centisome position: 73.07
GC content: 64.45
Gene sequence:
>1263_bases ATGCCGGTGCTTAAGCGTTTCGCGAATCCCGACGTCACACGCGCTGTCGCAAACCTTGTCTGGCTTGGGCTCGAGCGCCT GACGCAGATCGGCGTAGCGATCGCGACCAGCGGCGTGCTGGCCCGTTATTTCGGCCCCGACGTGTTCGGCAAATGGCAAT ACGCCAATACGCTTTTGCTCGTCCTGTCGCCGATTACATGGGTCTGCGGCGCCGAGATTCTCGTGCCGACCATCGTCCAT CGTCCGGCCGCACAGCTCGGCACCGTGCTCGGCAGCGCATTCGCGCTGCGCCTGTCGGTGTCGGCCGTGGCGCTGGCGCT GACGTGGGCCGGTATCGCCGCGGGCCTCACCGATCCCGTCGTCGGTGCGATGCTCGCCGGCCTCGCCGTGACGATGCTGT TCCGCGAGCCGTTCGTCGGTGTCATTAACGCGTGGCTGCAAAGCATGACGTACAGCAAGCCGCAATTGCTCACGAGCATG ACGACGGCCATCGCCAAGGCGCTGCTCGTCTGGCTGCTGGTGCGCGCCGCCGCCGCGCCCGCGCGCTTCGGCTGGCTGTG GGCGCTCGAATCCGCCGTGATTGGCGCAGTGCTGGTCGTCTATTACATGCGGCGCCACGGCGGCAAGCTCGGCTGGCGCA TCGACCGCACGCTCTTTCGCCATTTCGCGACGGCGGGCGCGGTGTTCTGGCTCGGCCTGATCTGCATGTATCTGTTCCTC AAGCTCGACCGGCTGATGCTGGAACGCGCGATTTCATTCGCCGACCTCGGCCGCTATTCCGCCGCACAACAGCTGAACGA AAACTGGATCACGCTGGCGCTGATGCTGGCGCAAACGCTTGCGCCAGCATTCGTCTACCGCGTTCAGGACGCCGCGCAAC TGCGCCACAATATGTGGCGGCTCACGGCGATGACGGCGGTGCTGATGATCGCGGGCGCATTCGTGCTGGATCTGCTTGCG GGGTTCATCATCCGCCGCGTGTTCGGGCCGAACTTCGAAGAGGCCGTCGACATCTTCCGCTGGGCCGTTTGGCTATCCGT GCCCGCGGGCATCGAGGCGATCGGCAATCTGGTCGTCCTCAAATATCAGGCGAAGTTCGTGTTGCTGTCGAAATGGCTGC TCGCGCTCGCCGTCGCGTGCGTCGTCAATCTGCTGGCGATTCCCCGTTTCGGCGCGTATGGCGCGTTGATCGGACTCGCG TGCGGCTATCTGGCCGCGGCCTCCGTCAACATTTACTACATCCGTTACAAGCTGCGTCCATGA
Upstream 100 bases:
>100_bases GCGCTCACAAAGTCGCCGCATCGTAAGATCGGCTGGGCACGCCAATTTCAAGACTACACGCACCTCCCGTGCCCGCCGCG TGCGTCCCGACATCATGCGG
Downstream 100 bases:
>100_bases CGTTTTCCCCACTCACGCAGCCTTTGGCCGGCGCACTCGACGACGTCGCCGTCCTCATGCCCGCATACAACGGCCAGACC GACGTCGACCGCACGCTCGC
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Lipopolysaccharide Biosynthesis Protein; O-Antigen Export Protein; Oligosaccharide Translocase; PST Family Polysaccharide Export Protein
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MPVLKRFANPDVTRAVANLVWLGLERLTQIGVAIATSGVLARYFGPDVFGKWQYANTLLLVLSPITWVCGAEILVPTIVH RPAAQLGTVLGSAFALRLSVSAVALALTWAGIAAGLTDPVVGAMLAGLAVTMLFREPFVGVINAWLQSMTYSKPQLLTSM TTAIAKALLVWLLVRAAAAPARFGWLWALESAVIGAVLVVYYMRRHGGKLGWRIDRTLFRHFATAGAVFWLGLICMYLFL KLDRLMLERAISFADLGRYSAAQQLNENWITLALMLAQTLAPAFVYRVQDAAQLRHNMWRLTAMTAVLMIAGAFVLDLLA GFIIRRVFGPNFEEAVDIFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLSKWLLALAVACVVNLLAIPRFGAYGALIGLA CGYLAAASVNIYYIRYKLRP
Sequences:
>Translated_420_residues MPVLKRFANPDVTRAVANLVWLGLERLTQIGVAIATSGVLARYFGPDVFGKWQYANTLLLVLSPITWVCGAEILVPTIVH RPAAQLGTVLGSAFALRLSVSAVALALTWAGIAAGLTDPVVGAMLAGLAVTMLFREPFVGVINAWLQSMTYSKPQLLTSM TTAIAKALLVWLLVRAAAAPARFGWLWALESAVIGAVLVVYYMRRHGGKLGWRIDRTLFRHFATAGAVFWLGLICMYLFL KLDRLMLERAISFADLGRYSAAQQLNENWITLALMLAQTLAPAFVYRVQDAAQLRHNMWRLTAMTAVLMIAGAFVLDLLA GFIIRRVFGPNFEEAVDIFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLSKWLLALAVACVVNLLAIPRFGAYGALIGLA CGYLAAASVNIYYIRYKLRP >Mature_419_residues PVLKRFANPDVTRAVANLVWLGLERLTQIGVAIATSGVLARYFGPDVFGKWQYANTLLLVLSPITWVCGAEILVPTIVHR PAAQLGTVLGSAFALRLSVSAVALALTWAGIAAGLTDPVVGAMLAGLAVTMLFREPFVGVINAWLQSMTYSKPQLLTSMT TAIAKALLVWLLVRAAAAPARFGWLWALESAVIGAVLVVYYMRRHGGKLGWRIDRTLFRHFATAGAVFWLGLICMYLFLK LDRLMLERAISFADLGRYSAAQQLNENWITLALMLAQTLAPAFVYRVQDAAQLRHNMWRLTAMTAVLMIAGAFVLDLLAG FIIRRVFGPNFEEAVDIFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLSKWLLALAVACVVNLLAIPRFGAYGALIGLAC GYLAAASVNIYYIRYKLRP
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46017; Mature: 45885
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVLKRFANPDVTRAVANLVWLGLERLTQIGVAIATSGVLARYFGPDVFGKWQYANTLLL CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH VLSPITWVCGAEILVPTIVHRPAAQLGTVLGSAFALRLSVSAVALALTWAGIAAGLTDPV HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH VGAMLAGLAVTMLFREPFVGVINAWLQSMTYSKPQLLTSMTTAIAKALLVWLLVRAAAAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ARFGWLWALESAVIGAVLVVYYMRRHGGKLGWRIDRTLFRHFATAGAVFWLGLICMYLFL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLDRLMLERAISFADLGRYSAAQQLNENWITLALMLAQTLAPAFVYRVQDAAQLRHNMWR HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTAMTAVLMIAGAFVLDLLAGFIIRRVFGPNFEEAVDIFRWAVWLSVPAGIEAIGNLVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHCCEEEE KYQAKFVLLSKWLLALAVACVVNLLAIPRFGAYGALIGLACGYLAAASVNIYYIRYKLRP EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEEEEEEECC >Mature Secondary Structure PVLKRFANPDVTRAVANLVWLGLERLTQIGVAIATSGVLARYFGPDVFGKWQYANTLLL CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH VLSPITWVCGAEILVPTIVHRPAAQLGTVLGSAFALRLSVSAVALALTWAGIAAGLTDPV HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH VGAMLAGLAVTMLFREPFVGVINAWLQSMTYSKPQLLTSMTTAIAKALLVWLLVRAAAAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ARFGWLWALESAVIGAVLVVYYMRRHGGKLGWRIDRTLFRHFATAGAVFWLGLICMYLFL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLDRLMLERAISFADLGRYSAAQQLNENWITLALMLAQTLAPAFVYRVQDAAQLRHNMWR HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTAMTAVLMIAGAFVLDLLAGFIIRRVFGPNFEEAVDIFRWAVWLSVPAGIEAIGNLVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHCCEEEE KYQAKFVLLSKWLLALAVACVVNLLAIPRFGAYGALIGLACGYLAAASVNIYYIRYKLRP EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA