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The map label for this gene is rfaC [H]

Identifier: 186477017

GI number: 186477017

Start: 2538939

End: 2540081

Strand: Reverse

Name: rfaC [H]

Synonym: Bphy_2266

Alternate gene names: 186477017

Gene position: 2540081-2538939 (Counterclockwise)

Preceding gene: 186477018

Following gene: 186477016

Centisome position: 73.01

GC content: 66.67

Gene sequence:

>1143_bases
ATGGCACCGAAGAGGGCAAGGCAGGCCGCGGTGCAGCCAGAAAAATCGCGAAACGCCGGAATCCGCGCGCGTGCGAAGGA
CCGCGCTAAAATTGCGTTCCTTCAAAAGCATCTTCACGCCGGAAGTCCGGCGTTCCCATTCTTGAGCGCGCAAAAGATCC
TGATCGTGAGAGTGTCGTCGCTGGGCGACGTCGTCCACAACATGCCCGTCGTCGCCGACATTCGCCGCCGTCATCCCGAT
GCGCAGATCGACTGGCTCGTCGAAGAGAGTTTCGTCAAGCTGGTCGAGCTGGTTCACGGCGTGCGGCGCGCGATCCCGGT
GTCGTTGCGGCGCTGGCGCAAGCGCATCCTTTCCGTCGATAACTGGCGCGAGATCGGCGCTTTCCGCCGCGCGCTCGCGG
CAGAAAACTACGATCTCGTGATCGACTGCCAGGGGCTCATCAAGACCGCGTGGGTCGCAAAGATGGCGCGCGGGCCGCTA
GTCGGACTCGGCAACCGCACGGACGGCGCGGGTTACGAATGGCCCGTGCGCTTCTTCTACGACCGCCGCGTGCCAATCGA
GCCGCGCACGCACGTCGTCGAACGTACCCGGCAACTGGTGGCGTCAGCGCTCGGCGAGCCCGCCCCAAAGCCCGCCGACG
ACATCGACTTCGGCCTCGACACCGCCCGCGCGGCACTCGCGCTGTCCGAAGCGCAGCTGAATCTTCCCGTGCCTTACGTG
GTGTTCGTTCACGCGACCTCGCGTGATGACAAGCAGTGGCCCGACGCCGCCTGGATCGAACTGGGCCAGGCGCTCGTGCG
GCGCGGCGCGTCGATCGTTCTGCCGTGGGGCAGTGACGCCGAGCGCGCGACGAGCGAACGCCTCGCGAAGGAGTTCGGCG
CAGCCGCCATCGTGCCGCCGAAACTGTCGCTGCCCGCCGTTGTCGGCCTGATCGACGGCGCGGCGGCCACGGTCGGGGTT
GATACAGGTCTGGTTCATATCGCCGCCGCGCTGAAGCGGCCGACGGTCGAGTTGTACAATTTCGCCACTTCATGGCGCAC
GGGCGGCTACTGGTCGCCGAACGTCGTGAATCTCGGCACGGCGGGCCAGCCGCCGACGCTGCAGCAGGTGAAGTCCGCGC
TGACCGGCTTCGGCCTGCTGTGA

Upstream 100 bases:

>100_bases
CGGTTCCTGGAGATCGAGCCTCAATCGATTGGCGAGTTCTTATGACGTGCCGCAGTAATCCGGCTATCCGTTTGCACCAT
GCGCTCAAGACAGGACGCGA

Downstream 100 bases:

>100_bases
CGCGGCTTTATCCGCTTTGAAAGGGCGATCATGAACGAATCCCAGATCATCGAAGTTGCAAGCGCCGACTGGCACGGCCA
GGGTTTGTCGGTGCCGCGCG

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MAPKRARQAAVQPEKSRNAGIRARAKDRAKIAFLQKHLHAGSPAFPFLSAQKILIVRVSSLGDVVHNMPVVADIRRRHPD
AQIDWLVEESFVKLVELVHGVRRAIPVSLRRWRKRILSVDNWREIGAFRRALAAENYDLVIDCQGLIKTAWVAKMARGPL
VGLGNRTDGAGYEWPVRFFYDRRVPIEPRTHVVERTRQLVASALGEPAPKPADDIDFGLDTARAALALSEAQLNLPVPYV
VFVHATSRDDKQWPDAAWIELGQALVRRGASIVLPWGSDAERATSERLAKEFGAAAIVPPKLSLPAVVGLIDGAAATVGV
DTGLVHIAAALKRPTVELYNFATSWRTGGYWSPNVVNLGTAGQPPTLQQVKSALTGFGLL

Sequences:

>Translated_380_residues
MAPKRARQAAVQPEKSRNAGIRARAKDRAKIAFLQKHLHAGSPAFPFLSAQKILIVRVSSLGDVVHNMPVVADIRRRHPD
AQIDWLVEESFVKLVELVHGVRRAIPVSLRRWRKRILSVDNWREIGAFRRALAAENYDLVIDCQGLIKTAWVAKMARGPL
VGLGNRTDGAGYEWPVRFFYDRRVPIEPRTHVVERTRQLVASALGEPAPKPADDIDFGLDTARAALALSEAQLNLPVPYV
VFVHATSRDDKQWPDAAWIELGQALVRRGASIVLPWGSDAERATSERLAKEFGAAAIVPPKLSLPAVVGLIDGAAATVGV
DTGLVHIAAALKRPTVELYNFATSWRTGGYWSPNVVNLGTAGQPPTLQQVKSALTGFGLL
>Mature_379_residues
APKRARQAAVQPEKSRNAGIRARAKDRAKIAFLQKHLHAGSPAFPFLSAQKILIVRVSSLGDVVHNMPVVADIRRRHPDA
QIDWLVEESFVKLVELVHGVRRAIPVSLRRWRKRILSVDNWREIGAFRRALAAENYDLVIDCQGLIKTAWVAKMARGPLV
GLGNRTDGAGYEWPVRFFYDRRVPIEPRTHVVERTRQLVASALGEPAPKPADDIDFGLDTARAALALSEAQLNLPVPYVV
FVHATSRDDKQWPDAAWIELGQALVRRGASIVLPWGSDAERATSERLAKEFGAAAIVPPKLSLPAVVGLIDGAAATVGVD
TGLVHIAAALKRPTVELYNFATSWRTGGYWSPNVVNLGTAGQPPTLQQVKSALTGFGLL

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=310, Percent_Identity=40.6451612903226, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 41607; Mature: 41476

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPKRARQAAVQPEKSRNAGIRARAKDRAKIAFLQKHLHAGSPAFPFLSAQKILIVRVSS
CCCHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHH
LGDVVHNMPVVADIRRRHPDAQIDWLVEESFVKLVELVHGVRRAIPVSLRRWRKRILSVD
HHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
NWREIGAFRRALAAENYDLVIDCQGLIKTAWVAKMARGPLVGLGNRTDGAGYEWPVRFFY
CHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEE
DRRVPIEPRTHVVERTRQLVASALGEPAPKPADDIDFGLDTARAALALSEAQLNLPVPYV
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
VFVHATSRDDKQWPDAAWIELGQALVRRGASIVLPWGSDAERATSERLAKEFGAAAIVPP
EEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEECCC
KLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATSWRTGGYWSPNVVNLGT
CCCHHHHHHHHCCCHHEEECHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEECCC
AGQPPTLQQVKSALTGFGLL
CCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
APKRARQAAVQPEKSRNAGIRARAKDRAKIAFLQKHLHAGSPAFPFLSAQKILIVRVSS
CCHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHH
LGDVVHNMPVVADIRRRHPDAQIDWLVEESFVKLVELVHGVRRAIPVSLRRWRKRILSVD
HHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
NWREIGAFRRALAAENYDLVIDCQGLIKTAWVAKMARGPLVGLGNRTDGAGYEWPVRFFY
CHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEE
DRRVPIEPRTHVVERTRQLVASALGEPAPKPADDIDFGLDTARAALALSEAQLNLPVPYV
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
VFVHATSRDDKQWPDAAWIELGQALVRRGASIVLPWGSDAERATSERLAKEFGAAAIVPP
EEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEECCC
KLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATSWRTGGYWSPNVVNLGT
CCCHHHHHHHHCCCHHEEECHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEECCC
AGQPPTLQQVKSALTGFGLL
CCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1527014; 11677609; 1657881 [H]