| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476626
Identifier: 186476626
GI number: 186476626
Start: 2130468
End: 2131685
Strand: Reverse
Name: 186476626
Synonym: Bphy_1871
Alternate gene names: NA
Gene position: 2131685-2130468 (Counterclockwise)
Preceding gene: 186476627
Following gene: 186476625
Centisome position: 61.27
GC content: 59.28
Gene sequence:
>1218_bases ATGACGGACACTTCGACAGTTTGGGACGTTGCGCATGGGCGCGGCGATTGGGTCGTCAATCCGACTACTCTCACGCAGAC GCCTATATCTGCAGCATCACCAACGCTGTTTGGTGTTGGCGATGGACTGGCGACACAGTTCCCGCTCGTTCCAGGCTCAA GCCAGATCAGCAACATCGTTGCCCAGATCTACCGCAACGACTGGCAAGGCAACCAGTTGCTGTATGCGACGGCGCGGACG AACTATCTGAAGCAGTCGCGGTTTTTTAGCGGATGGTCTACTGTCGCATCGGGAAGCGCGACTGCCGCCATTACGCCGGC CTCGGCGAATGGTCCGGATGGAACGGTAAATTCTGCGGCCAGAGTCGTGTATTCGGCGACATCTGCTGGGCAAATTCCGA TTGTGCGCATGGGAATTTCTATTCCCAACGGTGTGCCGATGTCGCCGAGCGTATGGGTGCTCGCGACGACCAGCATGACG CTCACATTGCGCTCGCCCGCTGCGAGCACGACGAATATTGCGGTCACTGGGTCGAATGCGTGGCAACGCCTCTCGCTGCC AGCCAGCCTCACGGGCAGTACGTTTTACAACTTCGACATTGGGTATGGTGCCAGCCAGCCCGGCGCGACAATCTATGTCG ATTGCGGGCAAATGGAGGAATCTTCAGCGGTGGGAGTCGGCGCGACCAGCTACATCCCCACCACCACCGCTGCGGTGACG GTGACGGATTATGCGCTGTCTCCGTATGGACTCGTCACCCTCGCAAGTGCACCTCTGCTCGGCGCGTCACTCACGTGGAC CGGTAGCTACCTGCTCAACACGGTTTCAATCGGTGGCGATGTTGAGACCGGCAATGACCTTGAAACGGCCATTTTGATAA GTCTGTTCACAGACAGGATAGCCGCGCCAGATGACGTTATTCCTGACGGCACGAACGATCCTCGCGGCTGGTGGGGCGAT GCCGGCGAGACGGTCAATATCGGCTCGCGGCTCTGGCTTCTGACGCGAGCAAAGCAGACGCAGGAAACGTTGCAACGCGC CTACGACTACATCGTTGAGGCGCTGCAATGGATGATCGACGACGGCGTCGTCGCCAAGTTCGACGTGCTGGTCGAGTGGA CCAAGGCAAGCGAGCTCGGCGCGCAGGTCGTCGCATACAAACAGGACGGCTCGACGTCGGCAACCGCCTATACGTGGGCA TGGCAGGGGATTAACTGA
Upstream 100 bases:
>100_bases TGTCGCAGATGCGGCAAATCTACAACACCCATACGCACGCGGTCGTCAACGTCCAAACAGGCGGCAGCACGATCAACACC AACGTACCGAGCGCTACGGA
Downstream 100 bases:
>100_bases TGCCGTTTTCCAGACCGACACTGACGGACCTTCAGACGCAGGTCGCATCCGACATCGCGTCGAGCGTGCCTGGCTCCGAT CCGCTACTGCGCTTTTCGAA
Product: GP46 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MTDTSTVWDVAHGRGDWVVNPTTLTQTPISAASPTLFGVGDGLATQFPLVPGSSQISNIVAQIYRNDWQGNQLLYATART NYLKQSRFFSGWSTVASGSATAAITPASANGPDGTVNSAARVVYSATSAGQIPIVRMGISIPNGVPMSPSVWVLATTSMT LTLRSPAASTTNIAVTGSNAWQRLSLPASLTGSTFYNFDIGYGASQPGATIYVDCGQMEESSAVGVGATSYIPTTTAAVT VTDYALSPYGLVTLASAPLLGASLTWTGSYLLNTVSIGGDVETGNDLETAILISLFTDRIAAPDDVIPDGTNDPRGWWGD AGETVNIGSRLWLLTRAKQTQETLQRAYDYIVEALQWMIDDGVVAKFDVLVEWTKASELGAQVVAYKQDGSTSATAYTWA WQGIN
Sequences:
>Translated_405_residues MTDTSTVWDVAHGRGDWVVNPTTLTQTPISAASPTLFGVGDGLATQFPLVPGSSQISNIVAQIYRNDWQGNQLLYATART NYLKQSRFFSGWSTVASGSATAAITPASANGPDGTVNSAARVVYSATSAGQIPIVRMGISIPNGVPMSPSVWVLATTSMT LTLRSPAASTTNIAVTGSNAWQRLSLPASLTGSTFYNFDIGYGASQPGATIYVDCGQMEESSAVGVGATSYIPTTTAAVT VTDYALSPYGLVTLASAPLLGASLTWTGSYLLNTVSIGGDVETGNDLETAILISLFTDRIAAPDDVIPDGTNDPRGWWGD AGETVNIGSRLWLLTRAKQTQETLQRAYDYIVEALQWMIDDGVVAKFDVLVEWTKASELGAQVVAYKQDGSTSATAYTWA WQGIN >Mature_404_residues TDTSTVWDVAHGRGDWVVNPTTLTQTPISAASPTLFGVGDGLATQFPLVPGSSQISNIVAQIYRNDWQGNQLLYATARTN YLKQSRFFSGWSTVASGSATAAITPASANGPDGTVNSAARVVYSATSAGQIPIVRMGISIPNGVPMSPSVWVLATTSMTL TLRSPAASTTNIAVTGSNAWQRLSLPASLTGSTFYNFDIGYGASQPGATIYVDCGQMEESSAVGVGATSYIPTTTAAVTV TDYALSPYGLVTLASAPLLGASLTWTGSYLLNTVSIGGDVETGNDLETAILISLFTDRIAAPDDVIPDGTNDPRGWWGDA GETVNIGSRLWLLTRAKQTQETLQRAYDYIVEALQWMIDDGVVAKFDVLVEWTKASELGAQVVAYKQDGSTSATAYTWAW QGIN
Specific function: Unknown
COG id: COG4381
COG function: function code S; Mu-like prophage protein gp46
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage Mu protein gp46 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010877 [H]
Pfam domain/function: PF07409 GP46 [H]
EC number: NA
Molecular weight: Translated: 42687; Mature: 42556
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTSTVWDVAHGRGDWVVNPTTLTQTPISAASPTLFGVGDGLATQFPLVPGSSQISNIV CCCCCCEEEHHCCCCCEEECCCEECCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHH AQIYRNDWQGNQLLYATARTNYLKQSRFFSGWSTVASGSATAAITPASANGPDGTVNSAA HHHHHCCCCCCEEEEEECCCCHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCE RVVYSATSAGQIPIVRMGISIPNGVPMSPSVWVLATTSMTLTLRSPAASTTNIAVTGSNA EEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCC WQRLSLPASLTGSTFYNFDIGYGASQPGATIYVDCGQMEESSAVGVGATSYIPTTTAAVT CEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE VTDYALSPYGLVTLASAPLLGASLTWTGSYLLNTVSIGGDVETGNDLETAILISLFTDRI EEEECCCCCCEEEEECCCCCCCEEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHC AAPDDVIPDGTNDPRGWWGDAGETVNIGSRLWLLTRAKQTQETLQRAYDYIVEALQWMID CCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC DGVVAKFDVLVEWTKASELGAQVVAYKQDGSTSATAYTWAWQGIN CCCEEEEEEEEEECCHHCCCCEEEEEECCCCCCCEEEEEEECCCC >Mature Secondary Structure TDTSTVWDVAHGRGDWVVNPTTLTQTPISAASPTLFGVGDGLATQFPLVPGSSQISNIV CCCCCEEEHHCCCCCEEECCCEECCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHH AQIYRNDWQGNQLLYATARTNYLKQSRFFSGWSTVASGSATAAITPASANGPDGTVNSAA HHHHHCCCCCCEEEEEECCCCHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCE RVVYSATSAGQIPIVRMGISIPNGVPMSPSVWVLATTSMTLTLRSPAASTTNIAVTGSNA EEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCC WQRLSLPASLTGSTFYNFDIGYGASQPGATIYVDCGQMEESSAVGVGATSYIPTTTAAVT CEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE VTDYALSPYGLVTLASAPLLGASLTWTGSYLLNTVSIGGDVETGNDLETAILISLFTDRI EEEECCCCCCEEEEECCCCCCCEEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHC AAPDDVIPDGTNDPRGWWGDAGETVNIGSRLWLLTRAKQTQETLQRAYDYIVEALQWMID CCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC DGVVAKFDVLVEWTKASELGAQVVAYKQDGSTSATAYTWAWQGIN CCCEEEEEEEEEECCHHCCCCEEEEEECCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]