| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476563
Identifier: 186476563
GI number: 186476563
Start: 2063804
End: 2065027
Strand: Reverse
Name: 186476563
Synonym: Bphy_1805
Alternate gene names: NA
Gene position: 2065027-2063804 (Counterclockwise)
Preceding gene: 186476565
Following gene: 186476562
Centisome position: 59.35
GC content: 64.71
Gene sequence:
>1224_bases ATGACCACGCCGACCACCTACGACGAATTCAAACAGCTTGCGATGCGGCTCGACATGTCGCGCGGCAAGCCGTCGCCCGA ACAACTGGACCTGTCGCGGGCGCTGCTCGACGAAGCGGGCACGACTGGCTTCCTGTCGCGCGACGGCATCGACTGCCGTA ATTACGGGCATGTGCTCGGCTTGCCTGAGGCGCGCGAACTGGGTGCACAATTGCTCGGCGTCGATGATGCGCAAGTGGTC GCGGCGGGCAATTCGAGCCTCGAACTGATGCACGACGCGCTTGCTTTCGCGATGCTGCATGGCTTGCCCGACTGCGCGCC GTGGTGCAGGCAGGGCGAGGTTGCGTTCCTGTGTCCTGTGCCCGGTTACGACCGGCACTTCGCGATCTGCGAGGCGCTTG GCATCCGCATGATTGCCGTGCCGACGACGCAGGACGGCCCCGACATGGACATGGTCGAAGCGCTGGTGAAAAACGATGCG TCCGTCAAGGGCATCTGGTGCATGCCGCTTTACAGCAACCCGAGCGGCGCGATCTGGTCGGCGGAAACGATCGAACGGCT CGCCGCGCTGCCTGCCGCCGCGAATGATTTCCGGCTCTTGTGGGACGATGCGTATCGCTTCCATCATCTGACGGACACGG CCCGCACCACGCCCAATATCGTCGAACTGTGCGAACGGGCAGGGCATGCCGATCGTGCGCTCGTGTTCGCTTCGCTGTCG AAGGTCACGGTGGCGGGCGGCGGCATCGCGTTTCTGGCTTCATCGGCGCGCAATATCGGCTGGTGGCAAAAGCAGATGAG CGTGCGGACGATCGGTCCCGACAAGCTGAACCAGCTGCGCCACGTGCGCTATCTGCGCGACCGCGAAGGGCTCGAACGTT TGATGGCGAAGCATCGCGCGCTGCTGCGTCCGAAGTTCGACGCAGTGATCTCCACCTTCGAAACCTTGCTTGGCGATCTG CCCGATGTGTCGTGGAATCGTCCTGAAGGCGGCTATTTCATCAGCCTGTATGTGCCGAAGGGCCACGCCAAACGCACCGT TGCACTCGCGGCCGAGGCGGGGCTCGTGCTGACGCCGGCGGGCGCCGCGTATCCGTACGGACGCGACGACGACGACCGGC ATTTGCGCATCGCGCCGACGTTCCCGTCGCTCGACGAAGTGAAGCTCGCAGCGCGTGGCATCGCGCTTGCCGTGCGGCGC GCGCTCGAAGACACGGCGCGTTGA
Upstream 100 bases:
>100_bases CATCAGGATTATTGATCGAAATGTTCAATATAACGCGTTTGTCTGAACTCAGGGGCGGCGGCATACTCGGTTCACACATC GCATGTCAAACGGGGACATC
Downstream 100 bases:
>100_bases CGATGCGTTTTGCGGCGGCCTTCGCGTCAGCGCCGTGCCGTCCGCGATCCATCGGTGCGATTCATGGCGTGCGCAACAAA CGGTAATGCCGTCGTCCACA
Product: GntR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MTTPTTYDEFKQLAMRLDMSRGKPSPEQLDLSRALLDEAGTTGFLSRDGIDCRNYGHVLGLPEARELGAQLLGVDDAQVV AAGNSSLELMHDALAFAMLHGLPDCAPWCRQGEVAFLCPVPGYDRHFAICEALGIRMIAVPTTQDGPDMDMVEALVKNDA SVKGIWCMPLYSNPSGAIWSAETIERLAALPAAANDFRLLWDDAYRFHHLTDTARTTPNIVELCERAGHADRALVFASLS KVTVAGGGIAFLASSARNIGWWQKQMSVRTIGPDKLNQLRHVRYLRDREGLERLMAKHRALLRPKFDAVISTFETLLGDL PDVSWNRPEGGYFISLYVPKGHAKRTVALAAEAGLVLTPAGAAYPYGRDDDDRHLRIAPTFPSLDEVKLAARGIALAVRR ALEDTAR
Sequences:
>Translated_407_residues MTTPTTYDEFKQLAMRLDMSRGKPSPEQLDLSRALLDEAGTTGFLSRDGIDCRNYGHVLGLPEARELGAQLLGVDDAQVV AAGNSSLELMHDALAFAMLHGLPDCAPWCRQGEVAFLCPVPGYDRHFAICEALGIRMIAVPTTQDGPDMDMVEALVKNDA SVKGIWCMPLYSNPSGAIWSAETIERLAALPAAANDFRLLWDDAYRFHHLTDTARTTPNIVELCERAGHADRALVFASLS KVTVAGGGIAFLASSARNIGWWQKQMSVRTIGPDKLNQLRHVRYLRDREGLERLMAKHRALLRPKFDAVISTFETLLGDL PDVSWNRPEGGYFISLYVPKGHAKRTVALAAEAGLVLTPAGAAYPYGRDDDDRHLRIAPTFPSLDEVKLAARGIALAVRR ALEDTAR >Mature_406_residues TTPTTYDEFKQLAMRLDMSRGKPSPEQLDLSRALLDEAGTTGFLSRDGIDCRNYGHVLGLPEARELGAQLLGVDDAQVVA AGNSSLELMHDALAFAMLHGLPDCAPWCRQGEVAFLCPVPGYDRHFAICEALGIRMIAVPTTQDGPDMDMVEALVKNDAS VKGIWCMPLYSNPSGAIWSAETIERLAALPAAANDFRLLWDDAYRFHHLTDTARTTPNIVELCERAGHADRALVFASLSK VTVAGGGIAFLASSARNIGWWQKQMSVRTIGPDKLNQLRHVRYLRDREGLERLMAKHRALLRPKFDAVISTFETLLGDLP DVSWNRPEGGYFISLYVPKGHAKRTVALAAEAGLVLTPAGAAYPYGRDDDDRHLRIAPTFPSLDEVKLAARGIALAVRRA LEDTAR
Specific function: Unknown
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: NA
Molecular weight: Translated: 44633; Mature: 44501
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPTTYDEFKQLAMRLDMSRGKPSPEQLDLSRALLDEAGTTGFLSRDGIDCRNYGHVLG CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEC LPEARELGAQLLGVDDAQVVAAGNSSLELMHDALAFAMLHGLPDCAPWCRQGEVAFLCPV CCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCC PGYDRHFAICEALGIRMIAVPTTQDGPDMDMVEALVKNDASVKGIWCMPLYSNPSGAIWS CCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEC AETIERLAALPAAANDFRLLWDDAYRFHHLTDTARTTPNIVELCERAGHADRALVFASLS HHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCHHCCCCHHHHHHHHCCCCCHHHHHHHHH KVTVAGGGIAFLASSARNIGWWQKQMSVRTIGPDKLNQLRHVRYLRDREGLERLMAKHRA HEEECCCCHHHHHHCCCCCCHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLRPKFDAVISTFETLLGDLPDVSWNRPEGGYFISLYVPKGHAKRTVALAAEAGLVLTPA HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCEEEECC GAAYPYGRDDDDRHLRIAPTFPSLDEVKLAARGIALAVRRALEDTAR CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTPTTYDEFKQLAMRLDMSRGKPSPEQLDLSRALLDEAGTTGFLSRDGIDCRNYGHVLG CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEC LPEARELGAQLLGVDDAQVVAAGNSSLELMHDALAFAMLHGLPDCAPWCRQGEVAFLCPV CCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCC PGYDRHFAICEALGIRMIAVPTTQDGPDMDMVEALVKNDASVKGIWCMPLYSNPSGAIWS CCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEC AETIERLAALPAAANDFRLLWDDAYRFHHLTDTARTTPNIVELCERAGHADRALVFASLS HHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCHHCCCCHHHHHHHHCCCCCHHHHHHHHH KVTVAGGGIAFLASSARNIGWWQKQMSVRTIGPDKLNQLRHVRYLRDREGLERLMAKHRA HEEECCCCHHHHHHCCCCCCHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLRPKFDAVISTFETLLGDLPDVSWNRPEGGYFISLYVPKGHAKRTVALAAEAGLVLTPA HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCEEEECC GAAYPYGRDDDDRHLRIAPTFPSLDEVKLAARGIALAVRRALEDTAR CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA