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The map label for this gene is yfeR [H]

Identifier: 186476493

GI number: 186476493

Start: 1981559

End: 1982461

Strand: Reverse

Name: yfeR [H]

Synonym: Bphy_1735

Alternate gene names: 186476493

Gene position: 1982461-1981559 (Counterclockwise)

Preceding gene: 186476496

Following gene: 186476492

Centisome position: 56.98

GC content: 67.22

Gene sequence:

>903_bases
ATGAATGTGACGCTGCGCCAATTGCGCGTCTTCATCGAGGTGGCGCGGCTGCAGAGTTTCAGCCGCGCGGGCAGCGAGAT
CGGCCTGACGCAGTCGGCCGTCAGCCGCTGCGTGCGCGAACTGGAAGCGGAAATCGGCCTCAAGCTGATCGATCGGACTA
CGCGAGAAGTCCAGCTGACGGACGTGGGCGGCAATCTGGTCGCGAGCGTGTCGCGGCTGCTCGTGGACCTCGACGATGCC
CTGCGCGAGATCCGCGAAATCGGCGAGCAGCGGCGCGGTCGCGTGATGGTGGCGGCGAGCCCGACTATCGCGTGCCGCTT
GATGCCAAATATCGTCACCGCGTGCAGCCAGCAGTTTCCGTACATCGCGCTCGGCTTGCGCGACGACGTGCAGAGCGACG
TGGTGCGCAAGGTGAAGTCGGGCGAAGTGGACTTCGGTGTCGTGATCGGCCCGCTTGCCGCCGACGATCTGTTCACGGAG
CCGCTGATGACCGACTCGTTCTGCCTTGTATCGCGCGATGACCATCCGCTCGCGCGGCGCGCCGAAATTGCGTGGCGTGA
GCTGGACGACGAGCGCCTCGTGATGCTGGATCAGGCATCGGGCAGTCGGCCGATCATCGATGCCGCGCTGGAAGAGCACG
GCGTCAGGGCCCATGTCGTGCAGGAACTCGGCCATCCGTCGACGGTGTTCGGGCTGGTGCAGGCTGGCGTGGGCGTGAGC
ATATTGCCGTGGCTTGCGCTGCCGCTGCCTGCCGGGTCATCGCTGGTCGCGCGGCCGCTCGTGCCGCGTGCCGAGCGCAC
GGTCGAACTGGTACGGCGGCGCGACCGCTCGCTGTCGCCCGCCGCCGATGCCGTGTGGAACCTGATCCATCAGGTGCCGG
GCCGGACTGAGGATCTGCGCTGA

Upstream 100 bases:

>100_bases
CGCTTTTTTGCTGCGTCGCAGCGAAGCTGTCGGCACGATGCGCAAATGCGGTAGAGGGCCTAACATATGCATCAAACGAC
ATCATTCATGAGGGCAAGGG

Downstream 100 bases:

>100_bases
CGTCGCCTGGCGTTTGTTGTGCGTGCGTCGTTTGCGCCGCTTCCAAGGGTGAAACAAAGGGTGAGAAGTTACACTCGCAT
CTTTCGACAGACCCGCCCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNVTLRQLRVFIEVARLQSFSRAGSEIGLTQSAVSRCVRELEAEIGLKLIDRTTREVQLTDVGGNLVASVSRLLVDLDDA
LREIREIGEQRRGRVMVAASPTIACRLMPNIVTACSQQFPYIALGLRDDVQSDVVRKVKSGEVDFGVVIGPLAADDLFTE
PLMTDSFCLVSRDDHPLARRAEIAWRELDDERLVMLDQASGSRPIIDAALEEHGVRAHVVQELGHPSTVFGLVQAGVGVS
ILPWLALPLPAGSSLVARPLVPRAERTVELVRRRDRSLSPAADAVWNLIHQVPGRTEDLR

Sequences:

>Translated_300_residues
MNVTLRQLRVFIEVARLQSFSRAGSEIGLTQSAVSRCVRELEAEIGLKLIDRTTREVQLTDVGGNLVASVSRLLVDLDDA
LREIREIGEQRRGRVMVAASPTIACRLMPNIVTACSQQFPYIALGLRDDVQSDVVRKVKSGEVDFGVVIGPLAADDLFTE
PLMTDSFCLVSRDDHPLARRAEIAWRELDDERLVMLDQASGSRPIIDAALEEHGVRAHVVQELGHPSTVFGLVQAGVGVS
ILPWLALPLPAGSSLVARPLVPRAERTVELVRRRDRSLSPAADAVWNLIHQVPGRTEDLR
>Mature_300_residues
MNVTLRQLRVFIEVARLQSFSRAGSEIGLTQSAVSRCVRELEAEIGLKLIDRTTREVQLTDVGGNLVASVSRLLVDLDDA
LREIREIGEQRRGRVMVAASPTIACRLMPNIVTACSQQFPYIALGLRDDVQSDVVRKVKSGEVDFGVVIGPLAADDLFTE
PLMTDSFCLVSRDDHPLARRAEIAWRELDDERLVMLDQASGSRPIIDAALEEHGVRAHVVQELGHPSTVFGLVQAGVGVS
ILPWLALPLPAGSSLVARPLVPRAERTVELVRRRDRSLSPAADAVWNLIHQVPGRTEDLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=48.4429065743945, Blast_Score=267, Evalue=8e-73,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=31.7241379310345, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=31.3380281690141, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=30.6338028169014, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=29.2, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=29.3286219081272, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788887, Length=279, Percent_Identity=26.1648745519713, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=29.4444444444444, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=176, Percent_Identity=31.25, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI2367136, Length=239, Percent_Identity=25.1046025104602, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789204, Length=278, Percent_Identity=26.2589928057554, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787530, Length=257, Percent_Identity=24.124513618677, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=218, Percent_Identity=27.9816513761468, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=293, Percent_Identity=23.5494880546075, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789506, Length=253, Percent_Identity=24.1106719367589, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=24.2798353909465, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787128, Length=138, Percent_Identity=29.7101449275362, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788626, Length=246, Percent_Identity=27.2357723577236, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790783, Length=161, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790011, Length=113, Percent_Identity=29.2035398230088, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=144, Percent_Identity=30.5555555555556, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789173, Length=186, Percent_Identity=27.4193548387097, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081978, Length=161, Percent_Identity=29.1925465838509, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32983; Mature: 32983

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTLRQLRVFIEVARLQSFSRAGSEIGLTQSAVSRCVRELEAEIGLKLIDRTTREVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCEEEEE
DVGGNLVASVSRLLVDLDDALREIREIGEQRRGRVMVAASPTIACRLMPNIVTACSQQFP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHCCCCC
YIALGLRDDVQSDVVRKVKSGEVDFGVVIGPLAADDLFTEPLMTDSFCLVSRDDHPLARR
EEEEECHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCCCCHHHH
AEIAWRELDDERLVMLDQASGSRPIIDAALEEHGVRAHVVQELGHPSTVFGLVQAGVGVS
HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHH
ILPWLALPLPAGSSLVARPLVPRAERTVELVRRRDRSLSPAADAVWNLIHQVPGRTEDLR
HHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNVTLRQLRVFIEVARLQSFSRAGSEIGLTQSAVSRCVRELEAEIGLKLIDRTTREVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCEEEEE
DVGGNLVASVSRLLVDLDDALREIREIGEQRRGRVMVAASPTIACRLMPNIVTACSQQFP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHCCCCC
YIALGLRDDVQSDVVRKVKSGEVDFGVVIGPLAADDLFTEPLMTDSFCLVSRDDHPLARR
EEEEECHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCCCCHHHH
AEIAWRELDDERLVMLDQASGSRPIIDAALEEHGVRAHVVQELGHPSTVFGLVQAGVGVS
HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHH
ILPWLALPLPAGSSLVARPLVPRAERTVELVRRRDRSLSPAADAVWNLIHQVPGRTEDLR
HHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]