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The map label for this gene is rpoE [H]

Identifier: 186476467

GI number: 186476467

Start: 1949998

End: 1950516

Strand: Reverse

Name: rpoE [H]

Synonym: Bphy_1709

Alternate gene names: 186476467

Gene position: 1950516-1949998 (Counterclockwise)

Preceding gene: 186476468

Following gene: 186476466

Centisome position: 56.06

GC content: 63.97

Gene sequence:

>519_bases
GTGAACTTCGAAGCTGAAGTGATTTCGTGGCTCCCGCAGTTGCGGCGCTATGCGCGCGCACTGACGGGTGACCCCGCATG
GGCGGACGACCTGGTTCAGGATACGGCCGAGCGTGCGCTCGCGCGCTGGAAAGGTTTCCGGCCCGACAGCAATCTTCGCG
CGTGGCTGCTGACGATCCTGCGGCACCTGTACATCGATCAGCTGCGCGTGCGCCGCGAAATCGCCGTCGACGATGAAAGC
GCGCCGTGGCGCAATCTCGAGGCGCCGCGCGGCGAAGTCGACGGCCTGGTGTTGCGCGACGTCCAGCGCGCGCTTTATTG
TTTGCCCGTTGAGCAGCGGGAAGTGATGCTGCTCATTTGTGTGGAGGAATTGAGTTATCAGGAGGCGTCCGCGGCGCTCG
GCGTGCCTATCGGCACGGTGATGTCGCGACTGTCTCGCGCCCGCGAACACATGCGGGCATTGTTGACGGAGGGACCCGTG
CATAAGTCGCCGTCGCTGAAAGTGGTGAAGAGCAGGTGA

Upstream 100 bases:

>100_bases
GGGCGACATGAGTTCGTCCGGCGGCGCGAGCAGCAGCGGGACGAGCGGCAGCAGCGGCGGCTATTGACGATGCCTGCGCT
CGTATGACGGCGCGAGCCGG

Downstream 100 bases:

>100_bases
ATAGCGCGCAATGAGTCACGACGAAAACTCTACCGGTTCCGCAAACGCACCCGATTTGCGTGCGCTGTCGGCGTTCGTCG
ATAACGAGCTGCCCGAGAGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MNFEAEVISWLPQLRRYARALTGDPAWADDLVQDTAERALARWKGFRPDSNLRAWLLTILRHLYIDQLRVRREIAVDDES
APWRNLEAPRGEVDGLVLRDVQRALYCLPVEQREVMLLICVEELSYQEASAALGVPIGTVMSRLSRAREHMRALLTEGPV
HKSPSLKVVKSR

Sequences:

>Translated_172_residues
MNFEAEVISWLPQLRRYARALTGDPAWADDLVQDTAERALARWKGFRPDSNLRAWLLTILRHLYIDQLRVRREIAVDDES
APWRNLEAPRGEVDGLVLRDVQRALYCLPVEQREVMLLICVEELSYQEASAALGVPIGTVMSRLSRAREHMRALLTEGPV
HKSPSLKVVKSR
>Mature_172_residues
MNFEAEVISWLPQLRRYARALTGDPAWADDLVQDTAERALARWKGFRPDSNLRAWLLTILRHLYIDQLRVRREIAVDDES
APWRNLEAPRGEVDGLVLRDVQRALYCLPVEQREVMLLICVEELSYQEASAALGVPIGTVMSRLSRAREHMRALLTEGPV
HKSPSLKVVKSR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19712; Mature: 19712

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFEAEVISWLPQLRRYARALTGDPAWADDLVQDTAERALARWKGFRPDSNLRAWLLTIL
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RHLYIDQLRVRREIAVDDESAPWRNLEAPRGEVDGLVLRDVQRALYCLPVEQREVMLLIC
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHH
VEELSYQEASAALGVPIGTVMSRLSRAREHMRALLTEGPVHKSPSLKVVKSR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
>Mature Secondary Structure
MNFEAEVISWLPQLRRYARALTGDPAWADDLVQDTAERALARWKGFRPDSNLRAWLLTIL
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RHLYIDQLRVRREIAVDDESAPWRNLEAPRGEVDGLVLRDVQRALYCLPVEQREVMLLIC
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHH
VEELSYQEASAALGVPIGTVMSRLSRAREHMRALLTEGPVHKSPSLKVVKSR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]