| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is proP [H]
Identifier: 186476249
GI number: 186476249
Start: 1687264
End: 1688733
Strand: Direct
Name: proP [H]
Synonym: Bphy_1491
Alternate gene names: 186476249
Gene position: 1687264-1688733 (Clockwise)
Preceding gene: 186476248
Following gene: 186476257
Centisome position: 48.5
GC content: 65.44
Gene sequence:
>1470_bases TTGACCGCTTCCAGCAACGGCTTCTGGCGACAAAACAACAACGACAACAGCCTCACACTCGACGACATCACGGTCGTCGA CAACGCTCTTCTCAAGCGTGCTGTCGGCGCGATGGCGCTCGGCAACGCGATGGAATGGTTCGATTTCGGCGTGTACAGCT ACATCGCCGTGACCCTCGGCAAAGTGTTCTTCCCGTCGAGCAGTCCGTCAGCCCAGCTGATCGCCACGTTCGGCACGTTC GCCGCCGCGTTCGTCGTGCGCCCGATCGGCGGCATGGTGTTCGGGCCGCTCGGCGACCGCATCGGCCGTCAGCGCGTGCT CGCGATGACGATGATCATGATGGCCGTCGGCACGTTCGCGATCGGCCTGATTCCGGATTACGGCTCGATCGGCATTCTCG CGCCCGCCTTGCTGCTGCTCGCGCGTCTCGTGCAGGGCTTCTCGACGGGCGGCGAATATGGCGGCGCGGCGACCTTCATC GCCGAGTTCGCAACCGACCGCCGCCGCGGCTTCGCGGGCAGCTTCCTCGAATTCGGCACGCTGGTCGGCTATATCTTCGG CGCGGGCACGGTGGCCGTGCTGACCGCGTCGCTGTCCCAGGAAGCGCTGCTGTCGTGGGGCTGGCGTGTGCCGTTCTTCA TCGCGGGTCCGCTGGGCCTCGTCGGCCTGTACATCCGGATGAAGCTCGAGGAAACGCCTGCCTTCAGGAAGGAAGCCGAA GCGCGCGAGGCCGACGAGAAGTCGCGCCCGAAGCAGAGCTTCATGGAACTGCTCGCGCAGCAATGGAAGCCGCTGCTGCA ATGCGTTGGCCTCGTGCTGATCTTCAACGTGACCGACTACATGGCGCTGTCGTATCTGCCCAGCTATCTGTCGGCGACGC TGCACTTCAACGAATCGCACGGCCTGTTCCTCGTGCTGGCCGTGATGGTGCTGATGATGCCGATGACGCTGTACGCAGGC CACCTGTCGGACACGATCGGCCGCAAGCCCGTCATGCTGCTCGGCTGCGTGGGTCTGTTCGCGCTGTCAATTCCTGCTCT GCTGTTGATCCGCACGGGCGCCGTGCTGCCCGTGTTCGGCGGTCTGCTGATCCTCGGTGCACTGCTGTCGACCTTCACGG GCGTGATGCCGTCGTCGCTGCCCGCCCTCTTTCCGACGAAGATCCGCTACGGCGCGCTCGCAATCGGCTTCAACGTGTCG GTGTCGCTGTTCGGCGGCACGACGCCGCTGGTCGCCGCGTGGCTGGTCGACCGCACCGGCAACGCGATGATGCCCGCGTA CTACCTGATGGGCGCGTCGATCATCGGTATCGTCTCCGTGCTCGCGCTGCGCGAGACGGCCCGCAAGCCGCTGCCCGGCT CAGGCCCGTGCGTCGCGACGCGTGCGGAAGCGCACGCCGTGCTGCGTGGCGAACGTGAAGCTGCGGAAATCGAAGAAGCG TATGCGGCTACCGCAACGGTGCGTGCATAA
Upstream 100 bases:
>100_bases GCCGGCTTCTGCCACGCCTTTGACCGCTCGCGAAACTGCACTTTCCAGCAATCCGTGGCGGAACGCTTCGCGTTCGGCCG CAGTCATAGGAGCATTCACC
Downstream 100 bases:
>100_bases GCGAGCCACACGTCTCGCACAGGACTGAAACGGGTCAGCTTCGGCTGATCCGTTTTTTATGGCGTCAGCGTATGCAACGT GGCTTCGACGCTTGCACCGT
Product: general substrate transporter
Products: betaine [Cytoplasm]; Proton [Cytoplasm]; L-proline [Cytoplasm] [C]
Alternate protein names: Proline porter II; PPII [H]
Number of amino acids: Translated: 489; Mature: 488
Protein sequence:
>489_residues MTASSNGFWRQNNNDNSLTLDDITVVDNALLKRAVGAMALGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQLIATFGTF AAAFVVRPIGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPDYGSIGILAPALLLLARLVQGFSTGGEYGGAATFI AEFATDRRRGFAGSFLEFGTLVGYIFGAGTVAVLTASLSQEALLSWGWRVPFFIAGPLGLVGLYIRMKLEETPAFRKEAE AREADEKSRPKQSFMELLAQQWKPLLQCVGLVLIFNVTDYMALSYLPSYLSATLHFNESHGLFLVLAVMVLMMPMTLYAG HLSDTIGRKPVMLLGCVGLFALSIPALLLIRTGAVLPVFGGLLILGALLSTFTGVMPSSLPALFPTKIRYGALAIGFNVS VSLFGGTTPLVAAWLVDRTGNAMMPAYYLMGASIIGIVSVLALRETARKPLPGSGPCVATRAEAHAVLRGEREAAEIEEA YAATATVRA
Sequences:
>Translated_489_residues MTASSNGFWRQNNNDNSLTLDDITVVDNALLKRAVGAMALGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQLIATFGTF AAAFVVRPIGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPDYGSIGILAPALLLLARLVQGFSTGGEYGGAATFI AEFATDRRRGFAGSFLEFGTLVGYIFGAGTVAVLTASLSQEALLSWGWRVPFFIAGPLGLVGLYIRMKLEETPAFRKEAE AREADEKSRPKQSFMELLAQQWKPLLQCVGLVLIFNVTDYMALSYLPSYLSATLHFNESHGLFLVLAVMVLMMPMTLYAG HLSDTIGRKPVMLLGCVGLFALSIPALLLIRTGAVLPVFGGLLILGALLSTFTGVMPSSLPALFPTKIRYGALAIGFNVS VSLFGGTTPLVAAWLVDRTGNAMMPAYYLMGASIIGIVSVLALRETARKPLPGSGPCVATRAEAHAVLRGEREAAEIEEA YAATATVRA >Mature_488_residues TASSNGFWRQNNNDNSLTLDDITVVDNALLKRAVGAMALGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQLIATFGTFA AAFVVRPIGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPDYGSIGILAPALLLLARLVQGFSTGGEYGGAATFIA EFATDRRRGFAGSFLEFGTLVGYIFGAGTVAVLTASLSQEALLSWGWRVPFFIAGPLGLVGLYIRMKLEETPAFRKEAEA READEKSRPKQSFMELLAQQWKPLLQCVGLVLIFNVTDYMALSYLPSYLSATLHFNESHGLFLVLAVMVLMMPMTLYAGH LSDTIGRKPVMLLGCVGLFALSIPALLLIRTGAVLPVFGGLLILGALLSTFTGVMPSSLPALFPTKIRYGALAIGFNVSV SLFGGTTPLVAAWLVDRTGNAMMPAYYLMGASIIGIVSVLALRETARKPLPGSGPCVATRAEAHAVLRGEREAAEIEEAY AATATVRA
Specific function: Proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in th
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1790550, Length=470, Percent_Identity=48.936170212766, Blast_Score=500, Evalue=1e-142, Organism=Escherichia coli, GI1788292, Length=436, Percent_Identity=30.045871559633, Blast_Score=194, Evalue=1e-50, Organism=Escherichia coli, GI1788942, Length=406, Percent_Identity=34.4827586206897, Blast_Score=191, Evalue=1e-49, Organism=Escherichia coli, GI1789941, Length=430, Percent_Identity=34.1860465116279, Blast_Score=185, Evalue=4e-48, Organism=Escherichia coli, GI87082231, Length=436, Percent_Identity=25, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87082404, Length=370, Percent_Identity=24.3243243243243, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR015041 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF08946 Osmo_CC; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 52134; Mature: 52003
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASSNGFWRQNNNDNSLTLDDITVVDNALLKRAVGAMALGNAMEWFDFGVYSYIAVTLG CCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH KVFFPSSSPSAQLIATFGTFAAAFVVRPIGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFA HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH IGLIPDYGSIGILAPALLLLARLVQGFSTGGEYGGAATFIAEFATDRRRGFAGSFLEFGT HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH LVGYIFGAGTVAVLTASLSQEALLSWGWRVPFFIAGPLGLVGLYIRMKLEETPAFRKEAE HHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHEEECCCCCHHHHHH AREADEKSRPKQSFMELLAQQWKPLLQCVGLVLIFNVTDYMALSYLPSYLSATLHFNESH HHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC GLFLVLAVMVLMMPMTLYAGHLSDTIGRKPVMLLGCVGLFALSIPALLLIRTGAVLPVFG CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GLLILGALLSTFTGVMPSSLPALFPTKIRYGALAIGFNVSVSLFGGTTPLVAAWLVDRTG HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCEEEEECEEEEEEECCCHHHHHHHHHHCCC NAMMPAYYLMGASIIGIVSVLALRETARKPLPGSGPCVATRAEAHAVLRGEREAAEIEEA CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHH YAATATVRA HHHHHHCCC >Mature Secondary Structure TASSNGFWRQNNNDNSLTLDDITVVDNALLKRAVGAMALGNAMEWFDFGVYSYIAVTLG CCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH KVFFPSSSPSAQLIATFGTFAAAFVVRPIGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFA HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH IGLIPDYGSIGILAPALLLLARLVQGFSTGGEYGGAATFIAEFATDRRRGFAGSFLEFGT HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH LVGYIFGAGTVAVLTASLSQEALLSWGWRVPFFIAGPLGLVGLYIRMKLEETPAFRKEAE HHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHEEECCCCCHHHHHH AREADEKSRPKQSFMELLAQQWKPLLQCVGLVLIFNVTDYMALSYLPSYLSATLHFNESH HHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC GLFLVLAVMVLMMPMTLYAGHLSDTIGRKPVMLLGCVGLFALSIPALLLIRTGAVLPVFG CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GLLILGALLSTFTGVMPSSLPALFPTKIRYGALAIGFNVSVSLFGGTTPLVAAWLVDRTG HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCEEEEECEEEEEEECCCHHHHHHHHHHCCC NAMMPAYYLMGASIIGIVSVLALRETARKPLPGSGPCVATRAEAHAVLRGEREAAEIEEA CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHH YAATATVRA HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: betaine [Periplasm]; Proton [Periplasm]; L-proline [Periplasm] [C]
Specific reaction: Proton [Periplasm] + betaine [Periplasm] = Proton [Cytoplasm] + betaine [Cytoplasm] Proton [Periplasm] + L-proline [Periplasm] = Proton [Cytoplasm] + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]