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The map label for this gene is rraA [C]

Identifier: 186476132

GI number: 186476132

Start: 1542510

End: 1543004

Strand: Reverse

Name: rraA [C]

Synonym: Bphy_1374

Alternate gene names: 186476132

Gene position: 1543004-1542510 (Counterclockwise)

Preceding gene: 186476134

Following gene: 186476131

Centisome position: 44.35

GC content: 64.24

Gene sequence:

>495_bases
ATGAACTTCGCAACGGCAGATCTGTGCGACGCGCATGAAGACCAATTGACTGCGGGTACGCTGCGCGTGCTCGATCCCGT
TTTCAGTCGTTTTGGGCGAGCGTCGCGTTTTGGCGGCGAAGCCGTCACGCTCAAGGTCTTCGAAGACAACACGCTGGTAC
GTGCGACGCTCGAAGAGAAAGGCGTGGCGCGCGTGCTGGTCGTCGACGGCGGCGGCAGTCTGCGCTGCGCGCTCGTTGGC
GGCAATCTGGGCAAGCTGGGCGAGAAGAACGGTTGGGCGGGCATCGTCGTATTCGGCTGCGTGCGCGACACGCTGGAACT
GAACGAATGCAACCTCGGCATTATCGCGCTCGCAACCCATCCTCAACGCAGCCAGAAACGCGGCGGTGGAGAGCGCGACG
TGTCCTTGCGATTGCCGGGCTCGGTCGTGCGGCCGGGGGAGTGGATCTATGCGGACAGCGACGGCGTGCTGGTGTCGAGC
GCGCCGCTCGTCTGA

Upstream 100 bases:

>100_bases
GGCGCGCGTATTGTCCGCCCATTGGCCGAACGGACGATGCGACATCGAAGAAATGGCGCGGCATAATGCACCGGATTCGT
TCGACCGCCTGGAGAATGCT

Downstream 100 bases:

>100_bases
CGCGTTGTGTGATCAGTGGCCTGATCGGTATAGGGAAGAGGGCAGTGGACTGATGCAAAACGTTTTTGTGTATGGCACCT
TGCGTGCCGGCGAGATCAAC

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MNFATADLCDAHEDQLTAGTLRVLDPVFSRFGRASRFGGEAVTLKVFEDNTLVRATLEEKGVARVLVVDGGGSLRCALVG
GNLGKLGEKNGWAGIVVFGCVRDTLELNECNLGIIALATHPQRSQKRGGGERDVSLRLPGSVVRPGEWIYADSDGVLVSS
APLV

Sequences:

>Translated_164_residues
MNFATADLCDAHEDQLTAGTLRVLDPVFSRFGRASRFGGEAVTLKVFEDNTLVRATLEEKGVARVLVVDGGGSLRCALVG
GNLGKLGEKNGWAGIVVFGCVRDTLELNECNLGIIALATHPQRSQKRGGGERDVSLRLPGSVVRPGEWIYADSDGVLVSS
APLV
>Mature_164_residues
MNFATADLCDAHEDQLTAGTLRVLDPVFSRFGRASRFGGEAVTLKVFEDNTLVRATLEEKGVARVLVVDGGGSLRCALVG
GNLGKLGEKNGWAGIVVFGCVRDTLELNECNLGIIALATHPQRSQKRGGGERDVSLRLPGSVVRPGEWIYADSDGVLVSS
APLV

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family

Homologues:

Organism=Escherichia coli, GI1790364, Length=163, Percent_Identity=41.7177914110429, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAAH_BURP8 (B2JIG2)

Other databases:

- EMBL:   CP001043
- RefSeq:   YP_001857602.1
- ProteinModelPortal:   B2JIG2
- GeneID:   6242865
- GenomeReviews:   CP001043_GR
- KEGG:   bph:Bphy_1374
- HOGENOM:   HBG668175
- OMA:   NCALLGD
- ProtClustDB:   PRK09372
- InterPro:   IPR005493
- InterPro:   IPR010203
- Gene3D:   G3DSA:3.50.30.40
- TIGRFAMs:   TIGR01935

Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase

EC number: NA

Molecular weight: Translated: 17365; Mature: 17365

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFATADLCDAHEDQLTAGTLRVLDPVFSRFGRASRFGGEAVTLKVFEDNTLVRATLEEK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEECCC
GVARVLVVDGGGSLRCALVGGNLGKLGEKNGWAGIVVFGCVRDTLELNECNLGIIALATH
CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEEEEEC
PQRSQKRGGGERDVSLRLPGSVVRPGEWIYADSDGVLVSSAPLV
CCHHHHCCCCCCEEEEECCCCEECCCCEEEECCCCEEEECCCCC
>Mature Secondary Structure
MNFATADLCDAHEDQLTAGTLRVLDPVFSRFGRASRFGGEAVTLKVFEDNTLVRATLEEK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEECCC
GVARVLVVDGGGSLRCALVGGNLGKLGEKNGWAGIVVFGCVRDTLELNECNLGIIALATH
CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEEEEEC
PQRSQKRGGGERDVSLRLPGSVVRPGEWIYADSDGVLVSSAPLV
CCHHHHCCCCCCEEEEECCCCEECCCCEEEECCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA