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The map label for this gene is ybfI [H]

Identifier: 186476021

GI number: 186476021

Start: 1412809

End: 1413681

Strand: Direct

Name: ybfI [H]

Synonym: Bphy_1262

Alternate gene names: 186476021

Gene position: 1412809-1413681 (Clockwise)

Preceding gene: 186476020

Following gene: 186476022

Centisome position: 40.61

GC content: 68.5

Gene sequence:

>873_bases
ATGCAGACAGATGACACGACGGCCGTCTCGACGACAAACACAGCAACGCCCGGGCTGCATCCCAACCGCGACTGGATCCG
GCGCGCGCCCGCGCAGGACGGCGTGGAACGCATCGAGGCATTCTTCCAGCGCAACGGCTACGCATTGCATCGGCACGATA
CTTACGCGATCGGTCGCACGCTTGCTGGCGTCCAGAGCTTTCATTACCGGCACAGTGTGCGCAACAGTCTGCCCGGCGGC
ACGATGGTGCTGCATCCCGACGAAGCGCACGACGGCCAGGCGGGCACCGACGAAGGCTTCCGCTACCGGATGATTTACGT
CGAGCCCGCCGTCTTCCAGGCGGCGCTGGGCGGCAAGCCGTTGCCGTTCATCGAAGGCGGGCTGTCGGATGACCCGCGCC
TCGCCCACGCGACGCAAGCGCTGCTGCAAGGCCTCGACCGCGCGCTGGATCCGCTCGAACAGGACGACGCGCTGTTCGAT
CTCGCGCACGCGCTCGACGCCGTGTCGAGCGCGCGCCCCGTTCAGCGCCCGCGCCCGTCCGCCGATTTCCGCGCCGCGCA
GCTTGCGCGCGATTACCTGCACGCATCGCTGGAGCAGCCCGTGACGCTCGACGAGCTGGCCGCCGCGAGCGGGCGCGACC
GCTGGAGTCTGTCGCGCGATTTCCGCACATTTTTCGGCACGAGTCCGCACCGATATCTGACCATGCGCCGCCTCGATGCC
GCGCGTCAGTCGATACTGCGCGGCATCGCGCTCGTCGATGCCGCCGCTGCCGCGGGCTTTGCGGACCAGAGCCATATGAC
GCGACATTTCGTGGCCGCGTACGGCGTGACGCCGTCGCGCTGGCTGCGCATGCTCACCGCGGACCTGCGCTGA

Upstream 100 bases:

>100_bases
GAGCAGGACTACGCGGACATCGAGTCAGTCACGAAGCTGATCGGCAGCAATTTCGGGCCGGGCCTTGGCATCTGACGGCG
CGCGTCAGCAGGCAGGCAGC

Downstream 100 bases:

>100_bases
ACCAGCGCCGCAGATTGGCACGAACGTTCAAGACGGCGGCCTGCGCGCGTCACTACACTCGCCGGCACTGACTTCAACGA
AAGGAAACGCCATGTCCGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MQTDDTTAVSTTNTATPGLHPNRDWIRRAPAQDGVERIEAFFQRNGYALHRHDTYAIGRTLAGVQSFHYRHSVRNSLPGG
TMVLHPDEAHDGQAGTDEGFRYRMIYVEPAVFQAALGGKPLPFIEGGLSDDPRLAHATQALLQGLDRALDPLEQDDALFD
LAHALDAVSSARPVQRPRPSADFRAAQLARDYLHASLEQPVTLDELAAASGRDRWSLSRDFRTFFGTSPHRYLTMRRLDA
ARQSILRGIALVDAAAAAGFADQSHMTRHFVAAYGVTPSRWLRMLTADLR

Sequences:

>Translated_290_residues
MQTDDTTAVSTTNTATPGLHPNRDWIRRAPAQDGVERIEAFFQRNGYALHRHDTYAIGRTLAGVQSFHYRHSVRNSLPGG
TMVLHPDEAHDGQAGTDEGFRYRMIYVEPAVFQAALGGKPLPFIEGGLSDDPRLAHATQALLQGLDRALDPLEQDDALFD
LAHALDAVSSARPVQRPRPSADFRAAQLARDYLHASLEQPVTLDELAAASGRDRWSLSRDFRTFFGTSPHRYLTMRRLDA
ARQSILRGIALVDAAAAAGFADQSHMTRHFVAAYGVTPSRWLRMLTADLR
>Mature_290_residues
MQTDDTTAVSTTNTATPGLHPNRDWIRRAPAQDGVERIEAFFQRNGYALHRHDTYAIGRTLAGVQSFHYRHSVRNSLPGG
TMVLHPDEAHDGQAGTDEGFRYRMIYVEPAVFQAALGGKPLPFIEGGLSDDPRLAHATQALLQGLDRALDPLEQDDALFD
LAHALDAVSSARPVQRPRPSADFRAAQLARDYLHASLEQPVTLDELAAASGRDRWSLSRDFRTFFGTSPHRYLTMRRLDA
ARQSILRGIALVDAAAAAGFADQSHMTRHFVAAYGVTPSRWLRMLTADLR

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32095; Mature: 32095

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTDDTTAVSTTNTATPGLHPNRDWIRRAPAQDGVERIEAFFQRNGYALHRHDTYAIGRT
CCCCCCCEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
LAGVQSFHYRHSVRNSLPGGTMVLHPDEAHDGQAGTDEGFRYRMIYVEPAVFQAALGGKP
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCC
LPFIEGGLSDDPRLAHATQALLQGLDRALDPLEQDDALFDLAHALDAVSSARPVQRPRPS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
ADFRAAQLARDYLHASLEQPVTLDELAAASGRDRWSLSRDFRTFFGTSPHRYLTMRRLDA
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
ARQSILRGIALVDAAAAAGFADQSHMTRHFVAAYGVTPSRWLRMLTADLR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MQTDDTTAVSTTNTATPGLHPNRDWIRRAPAQDGVERIEAFFQRNGYALHRHDTYAIGRT
CCCCCCCEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
LAGVQSFHYRHSVRNSLPGGTMVLHPDEAHDGQAGTDEGFRYRMIYVEPAVFQAALGGKP
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCC
LPFIEGGLSDDPRLAHATQALLQGLDRALDPLEQDDALFDLAHALDAVSSARPVQRPRPS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
ADFRAAQLARDYLHASLEQPVTLDELAAASGRDRWSLSRDFRTFFGTSPHRYLTMRRLDA
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
ARQSILRGIALVDAAAAAGFADQSHMTRHFVAAYGVTPSRWLRMLTADLR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]