| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476018
Identifier: 186476018
GI number: 186476018
Start: 1410547
End: 1411884
Strand: Direct
Name: 186476018
Synonym: Bphy_1259
Alternate gene names: NA
Gene position: 1410547-1411884 (Clockwise)
Preceding gene: 186476017
Following gene: 186476019
Centisome position: 40.54
GC content: 64.2
Gene sequence:
>1338_bases ATGAGCAAACCGTCCATCGATGCCGTCCGCCGCGACCATGCGGGCTGGATCTTCGTGCACATCCAGGGTGAGCCATACGA CCGCGGCGAACAGCACGGCCAGTTGCTCGCCGCCGAGATCCAGAACGCGATCCGCACCGCCCGCTATCTGGCGAAATGGG ACACGGGCGAGGATTTCGACACCTTCATCAATGCCGCCGTGGAGCAGTTCGCGCCCCGCATCGACAGCGAATACGCCGAC GAGATCCAGGGCATCGCCGACGGGGCGAAGCTCACGTTCGCAGAAGTGCTTGCGTGGAACGGCTACATGGATCTGCTGCA AAGCTGGTGGCCGCAGCACGCTGCGCAGCAGAAACCGCAACTCGGGTTGAAGCCGTGGCGCGGACGGCGCGGGCATCATT GCAGCGCATTCATCGCGACGGGCAGCGCGACGCGCGACGGCCGCATCGTCATGGCGCACAACTCATGGGACCGCTATGCG GCGGGCGACGCGTTCAACGTCGTGTTCGACATCGTCCCGGAAGCGGGCAACCGCATTCTGATGCAGGGGCTGCCCGGCTG CATCTCGAGCCTGACGGACTTCTGGGTCACGTCGGCGGGCCTGATGGTGACGGAGACGACGATTTCGAATTTCGCGGGCT ACAACGCATCGGGCGCGCCCGAGTTCTATCGTTCGCGACGCGCGACCCAGTACGCGAACAGCATCGGAGAATGGTGCGAG ATGTTCGCGATGGCCAACAACGGCGGCTACGCGAACAGCTGGCTGATCGGCGACGCGAAGACGGGCGAAATCGCCCGCTA TGAACTCGGTCTGCACTACTCCGGCTTCGAAAGCACGAAAGACGGTTTCTATAGCGGCTACAACACGGCGACAGACCTGA AAATCCGCAACCAGGAATGCACGGGCGAAGGCGAGGACTACACCGACGTGCGGAAGAACGGCGCGCGGCGGCTGCGCTTC ATGCAGCTGGAGGAAACGCATCGCGGCCGCATCGACGTCGAACTGGCGAAGGCGATGATCGCCGATCATCACGACGTCTA CCTCGATCGACCGGACAACCCGTGTTCGCGCACGATCTGCGGCCACCTCGAGCTCGACGACCAGCGTTTCGGAGGCTCGG ATCACGGCCCGTTCAATCCTTGGGGCGCGAACGACGGCAAGGTCGTCGACAGCGAGATGGCGCGCGACATGGCGTTCTTC GCGCGCTGGGGACATCCGTGCGGCCGGCCCTTCGATGCGCAGGCGTTCATGAAACGCCATCCGCAGTGGAACTGGCTGAA CGGCTATATGCGCGACCGGCCGTCGTGGCCCTGGACGCGTTTCGAGGTGCTGCGCTGA
Upstream 100 bases:
>100_bases CACGGCCCCGGGCACGAAAGAAGCTGCAAGCCGCATCCCGCGACATACGGCGCTGAGCAACGCCGGCGGCGATGCCACGT ACGTACGAACGGGAGCGAAG
Downstream 100 bases:
>100_bases GCCCGGGGCGTCACCGCCTGCCCCACGCCGGGTTAACGCGACCCGCTTTCTACATACGTGATGCCGTGCGCATGCCGCGC AGCCACACGGACGCTCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MSKPSIDAVRRDHAGWIFVHIQGEPYDRGEQHGQLLAAEIQNAIRTARYLAKWDTGEDFDTFINAAVEQFAPRIDSEYAD EIQGIADGAKLTFAEVLAWNGYMDLLQSWWPQHAAQQKPQLGLKPWRGRRGHHCSAFIATGSATRDGRIVMAHNSWDRYA AGDAFNVVFDIVPEAGNRILMQGLPGCISSLTDFWVTSAGLMVTETTISNFAGYNASGAPEFYRSRRATQYANSIGEWCE MFAMANNGGYANSWLIGDAKTGEIARYELGLHYSGFESTKDGFYSGYNTATDLKIRNQECTGEGEDYTDVRKNGARRLRF MQLEETHRGRIDVELAKAMIADHHDVYLDRPDNPCSRTICGHLELDDQRFGGSDHGPFNPWGANDGKVVDSEMARDMAFF ARWGHPCGRPFDAQAFMKRHPQWNWLNGYMRDRPSWPWTRFEVLR
Sequences:
>Translated_445_residues MSKPSIDAVRRDHAGWIFVHIQGEPYDRGEQHGQLLAAEIQNAIRTARYLAKWDTGEDFDTFINAAVEQFAPRIDSEYAD EIQGIADGAKLTFAEVLAWNGYMDLLQSWWPQHAAQQKPQLGLKPWRGRRGHHCSAFIATGSATRDGRIVMAHNSWDRYA AGDAFNVVFDIVPEAGNRILMQGLPGCISSLTDFWVTSAGLMVTETTISNFAGYNASGAPEFYRSRRATQYANSIGEWCE MFAMANNGGYANSWLIGDAKTGEIARYELGLHYSGFESTKDGFYSGYNTATDLKIRNQECTGEGEDYTDVRKNGARRLRF MQLEETHRGRIDVELAKAMIADHHDVYLDRPDNPCSRTICGHLELDDQRFGGSDHGPFNPWGANDGKVVDSEMARDMAFF ARWGHPCGRPFDAQAFMKRHPQWNWLNGYMRDRPSWPWTRFEVLR >Mature_444_residues SKPSIDAVRRDHAGWIFVHIQGEPYDRGEQHGQLLAAEIQNAIRTARYLAKWDTGEDFDTFINAAVEQFAPRIDSEYADE IQGIADGAKLTFAEVLAWNGYMDLLQSWWPQHAAQQKPQLGLKPWRGRRGHHCSAFIATGSATRDGRIVMAHNSWDRYAA GDAFNVVFDIVPEAGNRILMQGLPGCISSLTDFWVTSAGLMVTETTISNFAGYNASGAPEFYRSRRATQYANSIGEWCEM FAMANNGGYANSWLIGDAKTGEIARYELGLHYSGFESTKDGFYSGYNTATDLKIRNQECTGEGEDYTDVRKNGARRLRFM QLEETHRGRIDVELAKAMIADHHDVYLDRPDNPCSRTICGHLELDDQRFGGSDHGPFNPWGANDGKVVDSEMARDMAFFA RWGHPCGRPFDAQAFMKRHPQWNWLNGYMRDRPSWPWTRFEVLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005079 [H]
Pfam domain/function: PF03417 AAT [H]
EC number: NA
Molecular weight: Translated: 50379; Mature: 50247
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPSIDAVRRDHAGWIFVHIQGEPYDRGEQHGQLLAAEIQNAIRTARYLAKWDTGEDFD CCCCCCHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH TFINAAVEQFAPRIDSEYADEIQGIADGAKLTFAEVLAWNGYMDLLQSWWPQHAAQQKPQ HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC LGLKPWRGRRGHHCSAFIATGSATRDGRIVMAHNSWDRYAAGDAFNVVFDIVPEAGNRIL CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCHHEEHEEECCCCCCEEE MQGLPGCISSLTDFWVTSAGLMVTETTISNFAGYNASGAPEFYRSRRATQYANSIGEWCE ECCCCHHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MFAMANNGGYANSWLIGDAKTGEIARYELGLHYSGFESTKDGFYSGYNTATDLKIRNQEC HHHHCCCCCCCCEEEECCCCCCCEEEEEECEEECCCCCCCCCCCCCCCCEEEEEEECCCC TGEGEDYTDVRKNGARRLRFMQLEETHRGRIDVELAKAMIADHHDVYLDRPDNPCSRTIC CCCCCCHHHHHHCHHHHEEEEEHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHCEE GHLELDDQRFGGSDHGPFNPWGANDGKVVDSEMARDMAFFARWGHPCGRPFDAQAFMKRH CCEEECCHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC PQWNWLNGYMRDRPSWPWTRFEVLR CCCCCCCCHHCCCCCCCCHHHEECC >Mature Secondary Structure SKPSIDAVRRDHAGWIFVHIQGEPYDRGEQHGQLLAAEIQNAIRTARYLAKWDTGEDFD CCCCCHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH TFINAAVEQFAPRIDSEYADEIQGIADGAKLTFAEVLAWNGYMDLLQSWWPQHAAQQKPQ HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC LGLKPWRGRRGHHCSAFIATGSATRDGRIVMAHNSWDRYAAGDAFNVVFDIVPEAGNRIL CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCHHEEHEEECCCCCCEEE MQGLPGCISSLTDFWVTSAGLMVTETTISNFAGYNASGAPEFYRSRRATQYANSIGEWCE ECCCCHHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MFAMANNGGYANSWLIGDAKTGEIARYELGLHYSGFESTKDGFYSGYNTATDLKIRNQEC HHHHCCCCCCCCEEEECCCCCCCEEEEEECEEECCCCCCCCCCCCCCCCEEEEEEECCCC TGEGEDYTDVRKNGARRLRFMQLEETHRGRIDVELAKAMIADHHDVYLDRPDNPCSRTIC CCCCCCHHHHHHCHHHHEEEEEHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHCEE GHLELDDQRFGGSDHGPFNPWGANDGKVVDSEMARDMAFFARWGHPCGRPFDAQAFMKRH CCEEECCHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC PQWNWLNGYMRDRPSWPWTRFEVLR CCCCCCCCHHCCCCCCCCHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]