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The map label for this gene is 186475944

Identifier: 186475944

GI number: 186475944

Start: 1326190

End: 1327614

Strand: Reverse

Name: 186475944

Synonym: Bphy_1179

Alternate gene names: NA

Gene position: 1327614-1326190 (Counterclockwise)

Preceding gene: 186475945

Following gene: 186475943

Centisome position: 38.16

GC content: 60.42

Gene sequence:

>1425_bases
ATGAAGAAGACGCTATTTTTGCAGGCGCCGTCGTACGACGGTTTCGACGGCGGCGCGGGGTCGCGTTATCAGGCCAAGCG
TGAAATCCGCTCGTTCTGGTATCCGACCTGGCTCGCGCAGCCGGCCGCGCTCGTGCCCGGCAGCCGCGTGCTCGATGCGC
CCGCCGACGGTCTGTCTGTCGAAGCATCGCTTGCCATTGCGCAAGAGTATGAGGTGGTCGTGATTCACACGAGCACGCCG
TCTTTTCCGACGGATGCGCTCTTCGCCGAGCAGCTGAAAGCGCGCGCGCCGAAGGTGCTGGTCGGTATGGTCGGCGCGAA
GGTCGCCGTCGATCCGCACAACTCGCTGACGGCGAGCGAAGCGATCGACTTCGTGTGCCGCGAGGAATTCGACTTCACCT
GCAAGGAGATCGCCGAAGGGCTGCCGTTCGCGCAGATCAAGGGCTTGAGCTATCGCGCAGCGGACGGTTCGATCGAGCAC
AACGAAGCGCGCCCCATCCTCGAAAACATGGACGAACTGCCGTTCGTCGCGCCCGTCTACCAACGCGATCTGAAGATCGA
CAACTATTTCATCGGTTATCTGAAGCACCCGTATGTGTCGATCTACACGGGACGCGGCTGCCGTTCGCGCTGCACGTTCT
GCCTGTGGCCGCAGACGGTGGGCGGCCATCGCTACCGCACGCGCTCGGTCGAGAACGTGCTCGAAGAAGTGAAGTGGATT
CGCGACAACATGCCCGAAGTGAAGGAGATCATGTTCGACGACGACACCTTCACCGACTTCAAACCGCGCGTGGAAGAGAT
TGCGCGCGGTCTGGGCAAGCTTGGCGTCACGTGGTCGTGCAACGCGAAGGCGAACGTGCCGTACTCAACGCTCAAGATCA
TGAAGGAGAACGGCCTGCGCCTGCTGCTGGTCGGCTATGAATCGGGCGACGACCAGATCCTGCTGAACATCAAGAAGGGC
CTGCGCACCGATATCGCGCGGCGCTTTTCCGAAGACTGCCGCAAGCTCGGCATTAAGATTCACGGCACGTTCATTCTGGG
CTTGCCGGGCGAAACGAAAGAGACGATCCAGAAAACCATCGAATACGCGAAGGACATCAACCCGCACACCATTCAGGTGT
CGCTCGCGGCGCCTTATCCCGGCACGACGCTCTACCGGCAGGCCGTCGAGAACGGCTGGCTCGAAGAAAACAAGGTGATC
AATCTCGTCAGCAAGGAAGGCGTGCAGCTCGCGGCGATCGGTTATCCGCATCTGTCGCGCGAAGAGATCTATCACCATCT
GGAGCAGTTCTACCGGCAGTTTTATTTCCGTCCGTCGAAGATCTGGGAAATCGTGCGCGAGATGCTGGTGAGCTGGGAGA
TGATGAAACGGCGTCTGCGCGAAGGCGTCGAATTCTTCCGCTTCCTGCGGGCTCACGAGGCATGA

Upstream 100 bases:

>100_bases
TTCCGGCCCGAGCCCGTCAAGGCACTTGAAGTATCCGATGGCCGCTGAGCGCCACGATGTCGCGCGCGCTCGGCTCAATC
AAAACTCGTGGAAAACGAAG

Downstream 100 bases:

>100_bases
CGCAACGTGCGACGCATACGCCGCGACGCGCACTGATCGTTACCGCCGACGACTTCGGCCTGCATCCGCGCATCAACGAA
GCGGTCGAGCGCGCGCATCT

Product: hopanoid biosynthesis associated radical SAM protein HpnJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MKKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVLDAPADGLSVEASLAIAQEYEVVVIHTSTP
SFPTDALFAEQLKARAPKVLVGMVGAKVAVDPHNSLTASEAIDFVCREEFDFTCKEIAEGLPFAQIKGLSYRAADGSIEH
NEARPILENMDELPFVAPVYQRDLKIDNYFIGYLKHPYVSIYTGRGCRSRCTFCLWPQTVGGHRYRTRSVENVLEEVKWI
RDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKENGLRLLLVGYESGDDQILLNIKKG
LRTDIARRFSEDCRKLGIKIHGTFILGLPGETKETIQKTIEYAKDINPHTIQVSLAAPYPGTTLYRQAVENGWLEENKVI
NLVSKEGVQLAAIGYPHLSREEIYHHLEQFYRQFYFRPSKIWEIVREMLVSWEMMKRRLREGVEFFRFLRAHEA

Sequences:

>Translated_474_residues
MKKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVLDAPADGLSVEASLAIAQEYEVVVIHTSTP
SFPTDALFAEQLKARAPKVLVGMVGAKVAVDPHNSLTASEAIDFVCREEFDFTCKEIAEGLPFAQIKGLSYRAADGSIEH
NEARPILENMDELPFVAPVYQRDLKIDNYFIGYLKHPYVSIYTGRGCRSRCTFCLWPQTVGGHRYRTRSVENVLEEVKWI
RDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKENGLRLLLVGYESGDDQILLNIKKG
LRTDIARRFSEDCRKLGIKIHGTFILGLPGETKETIQKTIEYAKDINPHTIQVSLAAPYPGTTLYRQAVENGWLEENKVI
NLVSKEGVQLAAIGYPHLSREEIYHHLEQFYRQFYFRPSKIWEIVREMLVSWEMMKRRLREGVEFFRFLRAHEA
>Mature_474_residues
MKKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVLDAPADGLSVEASLAIAQEYEVVVIHTSTP
SFPTDALFAEQLKARAPKVLVGMVGAKVAVDPHNSLTASEAIDFVCREEFDFTCKEIAEGLPFAQIKGLSYRAADGSIEH
NEARPILENMDELPFVAPVYQRDLKIDNYFIGYLKHPYVSIYTGRGCRSRCTFCLWPQTVGGHRYRTRSVENVLEEVKWI
RDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKENGLRLLLVGYESGDDQILLNIKKG
LRTDIARRFSEDCRKLGIKIHGTFILGLPGETKETIQKTIEYAKDINPHTIQVSLAAPYPGTTLYRQAVENGWLEENKVI
NLVSKEGVQLAAIGYPHLSREEIYHHLEQFYRQFYFRPSKIWEIVREMLVSWEMMKRRLREGVEFFRFLRAHEA

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 54049; Mature: 54049

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVLDAPADGLSV
CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCEECCCCCCCEE
EASLAIAQEYEVVVIHTSTPSFPTDALFAEQLKARAPKVLVGMVGAKVAVDPHNSLTASE
EEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEHHCCEEEECCCCCCCHHH
AIDFVCREEFDFTCKEIAEGLPFAQIKGLSYRAADGSIEHNEARPILENMDELPFVAPVY
HHHHHHHHCCCCCHHHHHCCCCCHHCCCCEEECCCCCCCCCCCCCHHHCHHHCCCCCHHH
QRDLKIDNYFIGYLKHPYVSIYTGRGCRSRCTFCLWPQTVGGHRYRTRSVENVLEEVKWI
HHCCCCCCEEEEEECCCEEEEEECCCCHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
RDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKENGLR
HCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHCCCCE
LLLVGYESGDDQILLNIKKGLRTDIARRFSEDCRKLGIKIHGTFILGLPGETKETIQKTI
EEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHHHHH
EYAKDINPHTIQVSLAAPYPGTTLYRQAVENGWLEENKVINLVSKEGVQLAAIGYPHLSR
HHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCH
EEIYHHLEQFYRQFYFRPSKIWEIVREMLVSWEMMKRRLREGVEFFRFLRAHEA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVLDAPADGLSV
CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCEECCCCCCCEE
EASLAIAQEYEVVVIHTSTPSFPTDALFAEQLKARAPKVLVGMVGAKVAVDPHNSLTASE
EEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEHHCCEEEECCCCCCCHHH
AIDFVCREEFDFTCKEIAEGLPFAQIKGLSYRAADGSIEHNEARPILENMDELPFVAPVY
HHHHHHHHCCCCCHHHHHCCCCCHHCCCCEEECCCCCCCCCCCCCHHHCHHHCCCCCHHH
QRDLKIDNYFIGYLKHPYVSIYTGRGCRSRCTFCLWPQTVGGHRYRTRSVENVLEEVKWI
HHCCCCCCEEEEEECCCEEEEEECCCCHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
RDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKENGLR
HCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHCCCCE
LLLVGYESGDDQILLNIKKGLRTDIARRFSEDCRKLGIKIHGTFILGLPGETKETIQKTI
EEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHHHHH
EYAKDINPHTIQVSLAAPYPGTTLYRQAVENGWLEENKVINLVSKEGVQLAAIGYPHLSR
HHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCH
EEIYHHLEQFYRQFYFRPSKIWEIVREMLVSWEMMKRRLREGVEFFRFLRAHEA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]