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The map label for this gene is yphD [H]

Identifier: 186475914

GI number: 186475914

Start: 1288939

End: 1289937

Strand: Reverse

Name: yphD [H]

Synonym: Bphy_1149

Alternate gene names: 186475914

Gene position: 1289937-1288939 (Counterclockwise)

Preceding gene: 186475915

Following gene: 186475913

Centisome position: 37.08

GC content: 63.86

Gene sequence:

>999_bases
GTGACGTCTGCCGTGACGGATACCACGAAAGCGCAACGGCCGCGGCTTTGGTCGCGGTCGATCGTGCGCTCGAGCGAGAT
TCGCATCCTGCTGGTTGCGATCATTCTTTGCGCGTACTTCGAGACCGCGAACCACGACTTCCTGCTGACGGACGCGAGTC
TGAGGAACCTCTCGCAGTTCATCGCGCCCGTCGCGATCATCGCGTTCGGCGAGATCATGTTGATGATCGGCGGCGAAATC
GATCTGTCCGCCGGGATGGTCTTCGCATTCGCCCCGTTCGTGATGCATTTCGCGCACGAGGCGGGCGCGCCGGCGTGGCT
CGCGGTGATCGCCGGCGTCGTGGCGGCGGGTCTGATCGGCCTGATCAACGGCGCGGTGTCGGTGTATCTGCGCATACCGT
CGTTCGTCACGACACTCGGCACGCTGTTCTTCGTGAACGGCTTTACGCTGACGATCTCGCGCGGCACACCCGTGTCGCCG
CCCGAAGACGGCATGTTCGCCGAATTCATGGGCGCGTGGGGTTACAGCGAAATCATCTGGACGACCGCGCTGGCCGCGAT
CATGCACGTCACGCTGCGTCACACGCGCTGGGGACTTCACACGATTGCGTCCGGCGCGAATCCGCTCGGCGCCAGCGAGG
CGGGGATTCATGTACGTCGTCTGAAGCTCGGCAATTTCATCCTCGCCGCGGTGCTGGCCGGCTTTACAGGCATTCTGGAA
GGCTTTCGCATTTCATCGATCGATCCGCAGGCGGGCGGCAATCAGATCATGTTCCTCGCCGTGGCGGCGGCGGTGATCGG
CGGCACGCCGCTCGCGGGCGGCTCGGGGACGATCATCGGAGGCCTGATCGGCGCGGCCGTGCTCGGCATTCTGAACGACG
GCTTCACGCTGATCGGCATCAACGCCTTCACGTTCAACATGATTCTGGGCGCAGCGATTCTCGCGGCAATGATCTTCAAC
ATCCACGTCGTTCGCCTGGCGCGCAAGGGAGGGGCGTGA

Upstream 100 bases:

>100_bases
TGACGAAGGGTTCCGTCGATCCTTACCTCAACACGTCGACACGCTACGAAGGCAAGAGCACGAAGCCTGAAATCGTGCCG
CGCTCGGGAGCGATCAAGGG

Downstream 100 bases:

>100_bases
TGTCGTCGTTGCCCTTGTCGTCGTCCACCTCGCCGGCTCTGGCGTTGCGCGCAGAAGATATCGTCAAGCGTTTCGGCGCG
GTGACGGCGCTCGACGGCGT

Product: monosaccharide-transporting ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MTSAVTDTTKAQRPRLWSRSIVRSSEIRILLVAIILCAYFETANHDFLLTDASLRNLSQFIAPVAIIAFGEIMLMIGGEI
DLSAGMVFAFAPFVMHFAHEAGAPAWLAVIAGVVAAGLIGLINGAVSVYLRIPSFVTTLGTLFFVNGFTLTISRGTPVSP
PEDGMFAEFMGAWGYSEIIWTTALAAIMHVTLRHTRWGLHTIASGANPLGASEAGIHVRRLKLGNFILAAVLAGFTGILE
GFRISSIDPQAGGNQIMFLAVAAAVIGGTPLAGGSGTIIGGLIGAAVLGILNDGFTLIGINAFTFNMILGAAILAAMIFN
IHVVRLARKGGA

Sequences:

>Translated_332_residues
MTSAVTDTTKAQRPRLWSRSIVRSSEIRILLVAIILCAYFETANHDFLLTDASLRNLSQFIAPVAIIAFGEIMLMIGGEI
DLSAGMVFAFAPFVMHFAHEAGAPAWLAVIAGVVAAGLIGLINGAVSVYLRIPSFVTTLGTLFFVNGFTLTISRGTPVSP
PEDGMFAEFMGAWGYSEIIWTTALAAIMHVTLRHTRWGLHTIASGANPLGASEAGIHVRRLKLGNFILAAVLAGFTGILE
GFRISSIDPQAGGNQIMFLAVAAAVIGGTPLAGGSGTIIGGLIGAAVLGILNDGFTLIGINAFTFNMILGAAILAAMIFN
IHVVRLARKGGA
>Mature_331_residues
TSAVTDTTKAQRPRLWSRSIVRSSEIRILLVAIILCAYFETANHDFLLTDASLRNLSQFIAPVAIIAFGEIMLMIGGEID
LSAGMVFAFAPFVMHFAHEAGAPAWLAVIAGVVAAGLIGLINGAVSVYLRIPSFVTTLGTLFFVNGFTLTISRGTPVSPP
EDGMFAEFMGAWGYSEIIWTTALAAIMHVTLRHTRWGLHTIASGANPLGASEAGIHVRRLKLGNFILAAVLAGFTGILEG
FRISSIDPQAGGNQIMFLAVAAAVIGGTPLAGGSGTIIGGLIGAAVLGILNDGFTLIGINAFTFNMILGAAILAAMIFNI
HVVRLARKGGA

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=31.0679611650485, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790191, Length=327, Percent_Identity=29.6636085626911, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693152, Length=336, Percent_Identity=28.8690476190476, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790524, Length=290, Percent_Identity=29.3103448275862, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787793, Length=261, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082395, Length=244, Percent_Identity=31.9672131147541, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=32.5757575757576, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=30.5810397553517, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34737; Mature: 34606

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAVTDTTKAQRPRLWSRSIVRSSEIRILLVAIILCAYFETANHDFLLTDASLRNLSQF
CCCCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH
IAPVAIIAFGEIMLMIGGEIDLSAGMVFAFAPFVMHFAHEAGAPAWLAVIAGVVAAGLIG
HHHHHHHHHHHHHEEECCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LINGAVSVYLRIPSFVTTLGTLFFVNGFTLTISRGTPVSPPEDGMFAEFMGAWGYSEIIW
HHHHHHHHEEEHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHH
TTALAAIMHVTLRHTRWGLHTIASGANPLGASEAGIHVRRLKLGNFILAAVLAGFTGILE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHC
GFRISSIDPQAGGNQIMFLAVAAAVIGGTPLAGGSGTIIGGLIGAAVLGILNDGFTLIGI
CCEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
NAFTFNMILGAAILAAMIFNIHVVRLARKGGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSAVTDTTKAQRPRLWSRSIVRSSEIRILLVAIILCAYFETANHDFLLTDASLRNLSQF
CCCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH
IAPVAIIAFGEIMLMIGGEIDLSAGMVFAFAPFVMHFAHEAGAPAWLAVIAGVVAAGLIG
HHHHHHHHHHHHHEEECCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LINGAVSVYLRIPSFVTTLGTLFFVNGFTLTISRGTPVSPPEDGMFAEFMGAWGYSEIIW
HHHHHHHHEEEHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHH
TTALAAIMHVTLRHTRWGLHTIASGANPLGASEAGIHVRRLKLGNFILAAVLAGFTGILE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHC
GFRISSIDPQAGGNQIMFLAVAAAVIGGTPLAGGSGTIIGGLIGAAVLGILNDGFTLIGI
CCEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
NAFTFNMILGAAILAAMIFNIHVVRLARKGGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]