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The map label for this gene is rfbE [H]

Identifier: 186475838

GI number: 186475838

Start: 1207599

End: 1209077

Strand: Direct

Name: rfbE [H]

Synonym: Bphy_1073

Alternate gene names: 186475838

Gene position: 1207599-1209077 (Clockwise)

Preceding gene: 186475837

Following gene: 186475839

Centisome position: 34.71

GC content: 65.45

Gene sequence:

>1479_bases
ATGGACAAAGGCATCCTCAAGAACGTAGTGATCAACCTGATCGGACTGGTGTTGCCGACGTTTGTTTCGCTCGTCACGGT
GCCGTCGTACATCAAGCTGCTGGGCGTCGAGCGCTATGGCGTGATCAGTCTCGTCTGGACGCTGATCGGCTACTTCAGCA
TCCTCGATCTCGGTATGAGCATGGCCGCGCAGAACCACATCTCGAAGGCGCGCGCGTCGAACGACGCCAACGCCTGCGAG
CAGGTGTTCTGGAGCGCGACGTGGCTGAACCTGACGACGGGCATCGTCGGCGGCCTCGTGATCTACTTCGGCGCAGCGCT
GTACACCGCGTACTTCTCGAAGGTATCGCCCGAACTGCAGCACGAGGTCTATATGGCGCTGCCGTGGCTCGCGGCGGCGA
TTCCGCTGGCGAACGTCTCATGGGTGTTCGCGGGCGCGATTAACGGCGCGGAACGCTTCGGCATCTACAACACGAACCAG
ACGCTCGGCACCTTCCTGTTCCAGCTGTTGCCGCTCGCGGCCGCCTGGATGATGGGGCCGACGTTGCAGAACGTGCTCGC
GGCCGCCGTCGTCGCGCGTCTGCTCGCGGCGGTTCTACTCGGACGCTCCGCGTTGAGCGTGCTCGGCATCCGTCATATCC
GCGCGCCGCAATTCGCGGTGGCGAAGGGTCTGTTCAGTTTCGGCGGCTGGATGCTGATTGCGAGCATCACGGGCATGGTC
GCAGAATCGCTCGACCGCGTGATGCTCGGCACGAGTCTCGGCGCGCGCTTCGTCACGTATTACACGGTGCCGCAGAACCT
CGTCACGCGTCTGAACATCGTGCCCACGGCGATGCAGCGCACGCTGTTTCCGCGTCTGTCCGCCGTCGCCCGCGACGATG
CCGACCTGATCATGCGGCAATCGCTCGAGTTCCTGAACGGCGTGTTCACGCCTGTCGCGCTCGTCGCGATCATCGTGCTC
GAACCGTTCCTTCACGCATGGGTGGGCAGCGAGGTGGCCGACGCGGCAGGGCCCGTCGGCCGCATCCTGATCATCTCCGT
GTGGCTCGTCGGCCAGGCCAACCTCGCACGCATCCTCATTCAATCGCAGCTCAACCCCGCCTCCGCCGCGCGTCTCGGCC
TGTTCGAGCTGCCGTTCTTCGCGCTCGCGCTGTGGTTCGGCATCGCGCATTTCGGCCTCACGGGCGCGGCCGTCGTCGTC
GCGGCGCGCGGGCTGTTCGATTACGTCGTGCTGTTGCGCCTGTCCGCGATTCACGCGCGCCCGATCGTGCTCGACATGGG
CGCGCACCTCGCTTTCCTGGCGGGCACGCTGTGGCTCGCCACCTGGCTGTCCAGCCTGCCGATGGCCATGGCCGCGGGCG
CCCTCGTCGTGAGCGCGAACCTCGCATGGTCGCTCACGATGACCCCCGCATTGCGCGATCTTGCGCGCTCGCTGCTTGCG
CGCCTGAAGGTGCGACTCAATCCGAGGAATAGCGCATGA

Upstream 100 bases:

>100_bases
TACCGCTGGAAGCCCACTGCCAACACGTCAGCATCACGTTTCTCCACCCACACGCTACCCCGACACAGGCGCAACGCATG
ACTGACTCAAAAGGACTCCG

Downstream 100 bases:

>100_bases
ACCACGATATCGTTGAAGAAGACCTGCTGCGCCCCACGCCCGTGAAGCGCGATGCAGGCCACGATCTCAACACGGCCACG
CCCGTCTCGAAGCCGCCCGC

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MDKGILKNVVINLIGLVLPTFVSLVTVPSYIKLLGVERYGVISLVWTLIGYFSILDLGMSMAAQNHISKARASNDANACE
QVFWSATWLNLTTGIVGGLVIYFGAALYTAYFSKVSPELQHEVYMALPWLAAAIPLANVSWVFAGAINGAERFGIYNTNQ
TLGTFLFQLLPLAAAWMMGPTLQNVLAAAVVARLLAAVLLGRSALSVLGIRHIRAPQFAVAKGLFSFGGWMLIASITGMV
AESLDRVMLGTSLGARFVTYYTVPQNLVTRLNIVPTAMQRTLFPRLSAVARDDADLIMRQSLEFLNGVFTPVALVAIIVL
EPFLHAWVGSEVADAAGPVGRILIISVWLVGQANLARILIQSQLNPASAARLGLFELPFFALALWFGIAHFGLTGAAVVV
AARGLFDYVVLLRLSAIHARPIVLDMGAHLAFLAGTLWLATWLSSLPMAMAAGALVVSANLAWSLTMTPALRDLARSLLA
RLKVRLNPRNSA

Sequences:

>Translated_492_residues
MDKGILKNVVINLIGLVLPTFVSLVTVPSYIKLLGVERYGVISLVWTLIGYFSILDLGMSMAAQNHISKARASNDANACE
QVFWSATWLNLTTGIVGGLVIYFGAALYTAYFSKVSPELQHEVYMALPWLAAAIPLANVSWVFAGAINGAERFGIYNTNQ
TLGTFLFQLLPLAAAWMMGPTLQNVLAAAVVARLLAAVLLGRSALSVLGIRHIRAPQFAVAKGLFSFGGWMLIASITGMV
AESLDRVMLGTSLGARFVTYYTVPQNLVTRLNIVPTAMQRTLFPRLSAVARDDADLIMRQSLEFLNGVFTPVALVAIIVL
EPFLHAWVGSEVADAAGPVGRILIISVWLVGQANLARILIQSQLNPASAARLGLFELPFFALALWFGIAHFGLTGAAVVV
AARGLFDYVVLLRLSAIHARPIVLDMGAHLAFLAGTLWLATWLSSLPMAMAAGALVVSANLAWSLTMTPALRDLARSLLA
RLKVRLNPRNSA
>Mature_492_residues
MDKGILKNVVINLIGLVLPTFVSLVTVPSYIKLLGVERYGVISLVWTLIGYFSILDLGMSMAAQNHISKARASNDANACE
QVFWSATWLNLTTGIVGGLVIYFGAALYTAYFSKVSPELQHEVYMALPWLAAAIPLANVSWVFAGAINGAERFGIYNTNQ
TLGTFLFQLLPLAAAWMMGPTLQNVLAAAVVARLLAAVLLGRSALSVLGIRHIRAPQFAVAKGLFSFGGWMLIASITGMV
AESLDRVMLGTSLGARFVTYYTVPQNLVTRLNIVPTAMQRTLFPRLSAVARDDADLIMRQSLEFLNGVFTPVALVAIIVL
EPFLHAWVGSEVADAAGPVGRILIISVWLVGQANLARILIQSQLNPASAARLGLFELPFFALALWFGIAHFGLTGAAVVV
AARGLFDYVVLLRLSAIHARPIVLDMGAHLAFLAGTLWLATWLSSLPMAMAAGALVVSANLAWSLTMTPALRDLARSLLA
RLKVRLNPRNSA

Specific function: Could be an O-antigen transporter [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 52910; Mature: 52910

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCC
>Mature Secondary Structure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HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152 [H]