Definition Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence.
Accession NC_010622
Length 3,479,187

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The map label for this gene is yjkB [H]

Identifier: 186475752

GI number: 186475752

Start: 1103819

End: 1104559

Strand: Reverse

Name: yjkB [H]

Synonym: Bphy_0987

Alternate gene names: 186475752

Gene position: 1104559-1103819 (Counterclockwise)

Preceding gene: 186475754

Following gene: 186475751

Centisome position: 31.75

GC content: 68.56

Gene sequence:

>741_bases
ATGACCATGCCCCACAATACGACTCCCACGGACGCGCCCATCGTCGACGCGCATGACATCGTGCGGCGCGATGCGACGCG
CGGCCAAACGCTGCTGCAGCCAGCCCGCATCGCCATTCGCCCGGGCGAGCGCATCGCGATTACGGGCCCGTCGGGTTCGG
GCAAGAGCGTGTTCATGCGCGCGCTCGCGCTGCTCGATCCGCTCGATGGCGGCGAGGTGCGATGGCGCGGCAAGCGGATT
GCGCGCGCAACGATCCCACGCTATCGACGCCACGTCGCGTATATCCGTCAGCGTCCCGCGCTGCTCGACGGCACTGTCGA
AGACAACTTGCGCTACCCGTACACGCTGCATGCGTATCGCGACGTGCGCTTCGATCGCGCGCGCGCGGCGGCGCTCGCGT
CGCAGGCGGGCCGCTCAAGCGATTTTCTCGATCGATTCGCGAGCGAGCTGTCGGGCGGGGAAGCGCAGATCGCCGCCTTG
ATCCGCGTGCTGCAACTCGAGCCCGACGTGCTGCTGCTCGACGAACCCACTGCGTCGCTCGATCCCGAGTCCGCGCTCGC
GATCGAAGGACTCGTGCGTGCGTGGTTCGACGCCGCACCGCGGGCGCGCGCGTGGCTATGGGTATCGCACGATCCCGCGC
AGGCGGCACGCGTCAACAACCGGCATCTGACGATGCGCGCGGGCGTCCTCGACAACCCGCATGCCGCGCCGTTAGCTCAC
GTAACGGAGTCCTCGCGATGA

Upstream 100 bases:

>100_bases
AGCCATGAGGGCTCCCGAGAATGCCTCGTCATTCGACTTCGCAGCACGTGCTGTGCCCGCGTGTCCGCTTCGTTATCATG
ATGCGCTGCGACAGTTTTCT

Downstream 100 bases:

>100_bases
GCCTGCAGAGCCTCAGTCTCTGGGACGTCGCGCTGGCGGCGCTGCTGATCGTCGTGAACGGCGCGCTGTCGGTGGCGCTG
AAGCTCGATCTCGAACGCAA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTMPHNTTPTDAPIVDAHDIVRRDATRGQTLLQPARIAIRPGERIAITGPSGSGKSVFMRALALLDPLDGGEVRWRGKRI
ARATIPRYRRHVAYIRQRPALLDGTVEDNLRYPYTLHAYRDVRFDRARAAALASQAGRSSDFLDRFASELSGGEAQIAAL
IRVLQLEPDVLLLDEPTASLDPESALAIEGLVRAWFDAAPRARAWLWVSHDPAQAARVNNRHLTMRAGVLDNPHAAPLAH
VTESSR

Sequences:

>Translated_246_residues
MTMPHNTTPTDAPIVDAHDIVRRDATRGQTLLQPARIAIRPGERIAITGPSGSGKSVFMRALALLDPLDGGEVRWRGKRI
ARATIPRYRRHVAYIRQRPALLDGTVEDNLRYPYTLHAYRDVRFDRARAAALASQAGRSSDFLDRFASELSGGEAQIAAL
IRVLQLEPDVLLLDEPTASLDPESALAIEGLVRAWFDAAPRARAWLWVSHDPAQAARVNNRHLTMRAGVLDNPHAAPLAH
VTESSR
>Mature_245_residues
TMPHNTTPTDAPIVDAHDIVRRDATRGQTLLQPARIAIRPGERIAITGPSGSGKSVFMRALALLDPLDGGEVRWRGKRIA
RATIPRYRRHVAYIRQRPALLDGTVEDNLRYPYTLHAYRDVRFDRARAAALASQAGRSSDFLDRFASELSGGEAQIAALI
RVLQLEPDVLLLDEPTASLDPESALAIEGLVRAWFDAAPRARAWLWVSHDPAQAARVNNRHLTMRAGVLDNPHAAPLAHV
TESSR

Specific function: Unknown

COG id: COG4619

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42741659, Length=186, Percent_Identity=31.1827956989247, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI9955968, Length=183, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI9955966, Length=183, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI45243524, Length=183, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI255708477, Length=209, Percent_Identity=29.6650717703349, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI9955963, Length=166, Percent_Identity=31.9277108433735, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI42490749, Length=266, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI9665248, Length=166, Percent_Identity=31.9277108433735, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI21536378, Length=191, Percent_Identity=28.7958115183246, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4505771, Length=206, Percent_Identity=28.6407766990291, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI9961252, Length=206, Percent_Identity=28.6407766990291, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9961250, Length=188, Percent_Identity=27.1276595744681, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI66529005, Length=170, Percent_Identity=31.1764705882353, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI148612844, Length=192, Percent_Identity=29.6875, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI156105685, Length=197, Percent_Identity=30.4568527918782, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI9955970, Length=184, Percent_Identity=27.7173913043478, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI73747915, Length=165, Percent_Identity=32.1212121212121, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1786698, Length=191, Percent_Identity=35.0785340314136, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=29.2035398230088, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=29.9107142857143, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI145693107, Length=212, Percent_Identity=32.0754716981132, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787105, Length=239, Percent_Identity=32.2175732217573, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786872, Length=194, Percent_Identity=30.4123711340206, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=31.9444444444444, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081709, Length=226, Percent_Identity=27.8761061946903, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789873, Length=210, Percent_Identity=31.9047619047619, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789672, Length=204, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787089, Length=196, Percent_Identity=33.6734693877551, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787143, Length=183, Percent_Identity=31.1475409836066, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790467, Length=192, Percent_Identity=31.25, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787500, Length=196, Percent_Identity=29.0816326530612, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787712, Length=198, Percent_Identity=30.8080808080808, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789032, Length=223, Percent_Identity=30.9417040358744, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=29.0476190476191, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786253, Length=193, Percent_Identity=32.1243523316062, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=33.0143540669856, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788450, Length=203, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787370, Length=231, Percent_Identity=26.4069264069264, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789962, Length=193, Percent_Identity=25.3886010362694, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786398, Length=177, Percent_Identity=31.638418079096, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790544, Length=169, Percent_Identity=32.5443786982249, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1790162, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=28.2926829268293, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081791, Length=161, Percent_Identity=31.6770186335404, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787758, Length=193, Percent_Identity=28.4974093264249, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786345, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788506, Length=229, Percent_Identity=27.9475982532751, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786654, Length=153, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786975, Length=155, Percent_Identity=34.1935483870968, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367384, Length=193, Percent_Identity=30.0518134715026, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786653, Length=168, Percent_Identity=25, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1787759, Length=224, Percent_Identity=27.2321428571429, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=192, Percent_Identity=31.25, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17567265, Length=193, Percent_Identity=29.0155440414508, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193202349, Length=190, Percent_Identity=33.1578947368421, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115535101, Length=177, Percent_Identity=32.2033898305085, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71984940, Length=207, Percent_Identity=27.536231884058, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI193211017, Length=176, Percent_Identity=32.3863636363636, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193211015, Length=176, Percent_Identity=32.3863636363636, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71996809, Length=176, Percent_Identity=32.3863636363636, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17541710, Length=187, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17567269, Length=178, Percent_Identity=30.8988764044944, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17565938, Length=192, Percent_Identity=29.6875, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI25146777, Length=186, Percent_Identity=29.0322580645161, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17543740, Length=184, Percent_Identity=26.6304347826087, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17569143, Length=187, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17533971, Length=194, Percent_Identity=28.8659793814433, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=186, Percent_Identity=28.494623655914, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17569145, Length=184, Percent_Identity=29.8913043478261, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115533592, Length=195, Percent_Identity=29.7435897435897, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71992290, Length=158, Percent_Identity=31.0126582278481, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=162, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17569081, Length=163, Percent_Identity=32.5153374233129, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992080, Length=163, Percent_Identity=32.5153374233129, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI86564969, Length=163, Percent_Identity=32.5153374233129, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146765, Length=163, Percent_Identity=32.5153374233129, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992070, Length=163, Percent_Identity=32.5153374233129, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992066, Length=163, Percent_Identity=32.5153374233129, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=166, Percent_Identity=30.1204819277108, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=166, Percent_Identity=31.3253012048193, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=166, Percent_Identity=33.7349397590361, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6324985, Length=202, Percent_Identity=30.1980198019802, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322980, Length=223, Percent_Identity=26.9058295964126, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321720, Length=174, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6322640, Length=154, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24659289, Length=203, Percent_Identity=32.512315270936, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24653245, Length=220, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281363262, Length=219, Percent_Identity=29.2237442922374, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17136662, Length=209, Percent_Identity=30.622009569378, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19920928, Length=196, Percent_Identity=30.6122448979592, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI85726357, Length=185, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21357907, Length=169, Percent_Identity=28.9940828402367, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641565, Length=192, Percent_Identity=30.2083333333333, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643394, Length=228, Percent_Identity=27.1929824561404, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24585091, Length=199, Percent_Identity=28.1407035175879, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27150; Mature: 27019

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTMPHNTTPTDAPIVDAHDIVRRDATRGQTLLQPARIAIRPGERIAITGPSGSGKSVFMR
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCEEEECCCCEEEEECCCCCCHHHHHH
ALALLDPLDGGEVRWRGKRIARATIPRYRRHVAYIRQRPALLDGTVEDNLRYPYTLHAYR
HHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHH
DVRFDRARAAALASQAGRSSDFLDRFASELSGGEAQIAALIRVLQLEPDVLLLDEPTASL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
DPESALAIEGLVRAWFDAAPRARAWLWVSHDPAQAARVNNRHLTMRAGVLDNPHAAPLAH
CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCEEEEEECCCCCCCCCCHHH
VTESSR
HCCCCC
>Mature Secondary Structure 
TMPHNTTPTDAPIVDAHDIVRRDATRGQTLLQPARIAIRPGERIAITGPSGSGKSVFMR
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCEEEECCCCEEEEECCCCCCHHHHHH
ALALLDPLDGGEVRWRGKRIARATIPRYRRHVAYIRQRPALLDGTVEDNLRYPYTLHAYR
HHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHH
DVRFDRARAAALASQAGRSSDFLDRFASELSGGEAQIAALIRVLQLEPDVLLLDEPTASL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
DPESALAIEGLVRAWFDAAPRARAWLWVSHDPAQAARVNNRHLTMRAGVLDNPHAAPLAH
CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCEEEEEECCCCCCCCCCHHH
VTESSR
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]