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The map label for this gene is ygeR [H]

Identifier: 186475664

GI number: 186475664

Start: 1003734

End: 1004456

Strand: Reverse

Name: ygeR [H]

Synonym: Bphy_0899

Alternate gene names: 186475664

Gene position: 1004456-1003734 (Counterclockwise)

Preceding gene: 186475665

Following gene: 186475663

Centisome position: 28.87

GC content: 66.39

Gene sequence:

>723_bases
ATGTTGACAACAAAAATCAGACAGCTCGTCTGCGGGGCGATGGTCGCGGCACTGGCCGCATGCGGCTCGGCTCCCGTGGG
TCCGGGCTTCTATCGCGTCGAACGGGGCGACACGCTGTACAAGGTCGCGCGCAGCAACCGGACGTCGGTGCAGAACATCG
TGCGCTGGAACAACCTGTCGAATCCCGATTCGATCGAGGTCGGCCAGGTGCTGCGCGTCGCGCCGCCGCCCGGCACAGCG
ACGGCCAGCACGGCTCCGGCGCGAAGCAGCAATGGCAGCGGCAGCGCGAGCGCAGCGGCGGCAACGGCGTCCTCGTCGCG
CGGCGCGGCCGCCGACACGCCTTCGGCGCCTCCGTCGTCGATCTCGTTGATCTGGCCGGCAACGGGCAATGTGGTCCGCA
ACTTCGACGGCAATAATTCGAAAGGCATCGATATCGCGAACGCCGCGGGCACACCCGTGTTCGCCGCGGCGGGCGGCACC
GTCGTCTATGCAAGCAACGGCCTGCGCGGCTACGGCAATCTGCTGATCATCAAGCACAACGCCGATTACCTGACGGCCTA
CGCGCACAACCGCACGCTGCTCGTGAAGGAAGGCGAGACCGTGCAGCAAGGTCAGAAAATCGCCGAGATGGGCGACTCGG
ACAACGACCGCGTGATGCTGCATTTCGAACTGCGTTACGCGGGCCGCTCGATCGATCCGGCGCGGTCTCTGCCGCCACGC
TGA

Upstream 100 bases:

>100_bases
AGTCCGAAAACGGATGCTGCTTTGCAAAACCGTTAGAATCTGGCGTTTTGCAACTGCCGCGTGATCGGGATCGGCGCGCG
GCGGCGTCTTGCGAGGTCCA

Downstream 100 bases:

>100_bases
ACGCGCTGCCCGATCCGTCACGCCGTCCACGTTGGCGCCCCTTCGACGCCCTTCACATGGCGGCGTGCGCCGTGTCGGGG
AACCAGACGGGCCGTACACG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLTTKIRQLVCGAMVAALAACGSAPVGPGFYRVERGDTLYKVARSNRTSVQNIVRWNNLSNPDSIEVGQVLRVAPPPGTA
TASTAPARSSNGSGSASAAAATASSSRGAAADTPSAPPSSISLIWPATGNVVRNFDGNNSKGIDIANAAGTPVFAAAGGT
VVYASNGLRGYGNLLIIKHNADYLTAYAHNRTLLVKEGETVQQGQKIAEMGDSDNDRVMLHFELRYAGRSIDPARSLPPR

Sequences:

>Translated_240_residues
MLTTKIRQLVCGAMVAALAACGSAPVGPGFYRVERGDTLYKVARSNRTSVQNIVRWNNLSNPDSIEVGQVLRVAPPPGTA
TASTAPARSSNGSGSASAAAATASSSRGAAADTPSAPPSSISLIWPATGNVVRNFDGNNSKGIDIANAAGTPVFAAAGGT
VVYASNGLRGYGNLLIIKHNADYLTAYAHNRTLLVKEGETVQQGQKIAEMGDSDNDRVMLHFELRYAGRSIDPARSLPPR
>Mature_240_residues
MLTTKIRQLVCGAMVAALAACGSAPVGPGFYRVERGDTLYKVARSNRTSVQNIVRWNNLSNPDSIEVGQVLRVAPPPGTA
TASTAPARSSNGSGSASAAAATASSSRGAAADTPSAPPSSISLIWPATGNVVRNFDGNNSKGIDIANAAGTPVFAAAGGT
VVYASNGLRGYGNLLIIKHNADYLTAYAHNRTLLVKEGETVQQGQKIAEMGDSDNDRVMLHFELRYAGRSIDPARSLPPR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=242, Percent_Identity=43.801652892562, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=56.3025210084034, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI87082297, Length=116, Percent_Identity=32.7586206896552, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 24895; Mature: 24895

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTTKIRQLVCGAMVAALAACGSAPVGPGFYRVERGDTLYKVARSNRTSVQNIVRWNNLS
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEHHCCCHHHHHHHHHCCCC
NPDSIEVGQVLRVAPPPGTATASTAPARSSNGSGSASAAAATASSSRGAAADTPSAPPSS
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCC
ISLIWPATGNVVRNFDGNNSKGIDIANAAGTPVFAAAGGTVVYASNGLRGYGNLLIIKHN
EEEEECCCCCEEEECCCCCCCCEEEECCCCCCEEEECCCEEEEECCCCCCCCCEEEEEEC
ADYLTAYAHNRTLLVKEGETVQQGQKIAEMGDSDNDRVMLHFELRYAGRSIDPARSLPPR
CCEEEEEECCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLTTKIRQLVCGAMVAALAACGSAPVGPGFYRVERGDTLYKVARSNRTSVQNIVRWNNLS
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEHHCCCHHHHHHHHHCCCC
NPDSIEVGQVLRVAPPPGTATASTAPARSSNGSGSASAAAATASSSRGAAADTPSAPPSS
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCC
ISLIWPATGNVVRNFDGNNSKGIDIANAAGTPVFAAAGGTVVYASNGLRGYGNLLIIKHN
EEEEECCCCCEEEECCCCCCCCEEEECCCCCCEEEECCCEEEEECCCCCCCCCEEEEEEC
ADYLTAYAHNRTLLVKEGETVQQGQKIAEMGDSDNDRVMLHFELRYAGRSIDPARSLPPR
CCEEEEEECCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]