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The map label for this gene is 186475622

Identifier: 186475622

GI number: 186475622

Start: 955488

End: 956114

Strand: Reverse

Name: 186475622

Synonym: Bphy_0857

Alternate gene names: NA

Gene position: 956114-955488 (Counterclockwise)

Preceding gene: 186475625

Following gene: 186475621

Centisome position: 27.48

GC content: 66.19

Gene sequence:

>627_bases
TTGCACGCCCTCATCACACACGCGCCCGTCCGACGGCGCCTCGCGGCGCTGGGCCTCGCGCTGTGCGCGGCGCTCGGCGG
CGCGGGATGCTCGCAGCGGCCCGAGCCGTGGCAGCTCACAGACGTGAGCGGGCACCTGCCCGACCTCGGTTTCACGTTGA
CGGATGACGATGGGCAGCCCGTCGCGGCCGAGGCGCTCAAAGGGCGCGCGTCGCTCGTCTACTTCGGCTACACGCATTGT
CCCGATGTGTGCCCGGAAACGATGGGACGTCTGGTGCAGGTCATCGGCAAACTCGGGTCCGATGCGGCGAAGGTGCGCAT
CCTGTTCGTCACCGTCGATCCTGCGCGCGACACGCCGAAGGCATTGCACGACTATGTCGCCGCATTTGATGCGCAGCATG
CGCGAGGCCTGACGGGCACCGATGCGCAAATCGAGCGCGTCGCGCGGGACTATCGCGTCGCGTATCAGATGGAGAAGCGC
GATCCGAACGGCAACTACGAAGTGACGCATAGTTCGGCTGTTTACATCTTCGACGCACGCAATCACGCACGCCTGCTCGC
CACGGATCACGACACGCCCGACGACATCGCGCGGGACGTGCGCCGTATCATTGAACACCCCTCCTGA

Upstream 100 bases:

>100_bases
GCACGCTATCGAGTTTTGCCCATCGCGGCGCGTGGTTTGCGTTCTGTTCTGAATCGAGTCGTCGAAACCGCCTTTGTTCC
CGAAAACACCGGTGTTCCAC

Downstream 100 bases:

>100_bases
TTTTTTACAGGTTCGTCATGACACAACAAATCAAAACGCTCTCGACGCTTCACATGCTGGTTTGCGCCGCCACTTTCGCC
TGTGCCGCGACGGGCAGCAT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MHALITHAPVRRRLAALGLALCAALGGAGCSQRPEPWQLTDVSGHLPDLGFTLTDDDGQPVAAEALKGRASLVYFGYTHC
PDVCPETMGRLVQVIGKLGSDAAKVRILFVTVDPARDTPKALHDYVAAFDAQHARGLTGTDAQIERVARDYRVAYQMEKR
DPNGNYEVTHSSAVYIFDARNHARLLATDHDTPDDIARDVRRIIEHPS

Sequences:

>Translated_208_residues
MHALITHAPVRRRLAALGLALCAALGGAGCSQRPEPWQLTDVSGHLPDLGFTLTDDDGQPVAAEALKGRASLVYFGYTHC
PDVCPETMGRLVQVIGKLGSDAAKVRILFVTVDPARDTPKALHDYVAAFDAQHARGLTGTDAQIERVARDYRVAYQMEKR
DPNGNYEVTHSSAVYIFDARNHARLLATDHDTPDDIARDVRRIIEHPS
>Mature_208_residues
MHALITHAPVRRRLAALGLALCAALGGAGCSQRPEPWQLTDVSGHLPDLGFTLTDDDGQPVAAEALKGRASLVYFGYTHC
PDVCPETMGRLVQVIGKLGSDAAKVRILFVTVDPARDTPKALHDYVAAFDAQHARGLTGTDAQIERVARDYRVAYQMEKR
DPNGNYEVTHSSAVYIFDARNHARLLATDHDTPDDIARDVRRIIEHPS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=135, Percent_Identity=38.5185185185185, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI281182727, Length=132, Percent_Identity=38.6363636363636, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI281182722, Length=132, Percent_Identity=38.6363636363636, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI281182716, Length=132, Percent_Identity=38.6363636363636, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI153791313, Length=132, Percent_Identity=38.6363636363636, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17531419, Length=132, Percent_Identity=32.5757575757576, Blast_Score=90, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6319498, Length=130, Percent_Identity=43.0769230769231, Blast_Score=113, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6319511, Length=165, Percent_Identity=32.7272727272727, Blast_Score=89, Evalue=5e-19,
Organism=Drosophila melanogaster, GI19920710, Length=130, Percent_Identity=33.8461538461538, Blast_Score=91, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22734; Mature: 22734

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHALITHAPVRRRLAALGLALCAALGGAGCSQRPEPWQLTDVSGHLPDLGFTLTDDDGQP
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCC
VAAEALKGRASLVYFGYTHCPDVCPETMGRLVQVIGKLGSDAAKVRILFVTVDPARDTPK
HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHH
ALHDYVAAFDAQHARGLTGTDAQIERVARDYRVAYQMEKRDPNGNYEVTHSSAVYIFDAR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECC
NHARLLATDHDTPDDIARDVRRIIEHPS
CCEEEEEECCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHALITHAPVRRRLAALGLALCAALGGAGCSQRPEPWQLTDVSGHLPDLGFTLTDDDGQP
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCC
VAAEALKGRASLVYFGYTHCPDVCPETMGRLVQVIGKLGSDAAKVRILFVTVDPARDTPK
HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHH
ALHDYVAAFDAQHARGLTGTDAQIERVARDYRVAYQMEKRDPNGNYEVTHSSAVYIFDAR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECC
NHARLLATDHDTPDDIARDVRRIIEHPS
CCEEEEEECCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]