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The map label for this gene is ybfI [H]

Identifier: 186475570

GI number: 186475570

Start: 903682

End: 904509

Strand: Reverse

Name: ybfI [H]

Synonym: Bphy_0805

Alternate gene names: 186475570

Gene position: 904509-903682 (Counterclockwise)

Preceding gene: 186475571

Following gene: 186475569

Centisome position: 26.0

GC content: 68.6

Gene sequence:

>828_bases
ATGACTTCGCCCCGCTTCCGCGACAACGCCCGCTACTGGCGCACGCCGCTTCTACCCGGCGCGGATCTGCTCACGGCCGA
ATATCACGATCACGCGTTCACCCCACACTGGCACGACGCGTACACGATTCCCGTGATCGAGGCGGGCGCGGAAGCATATC
GCTATCGGGGCTCGCGTCACGTCGCCGAAGCGGGCAGCGTCCCGATCATCAATCCCGGCGAGCTGCACACGGGGTCGCGC
GCAATGGACGAAGGCTGGCGGTATCGCGTGATGTACGCGCCCGTCGAGTTCCTTCACACGCTCGCAGAAAACATCGCGGG
CTGCGCGCAGCCGCTGCCGTGGTTCGATGCCGATGTGATCCGCGACCGCGATCTCGCCCTGCGGCTGTCGCATGCGCACC
GGTTGCTCGAGGCGAACGGCGATCCGCTCGCCGCGGAAACGGCGATGCTCGACGCGCTGTCGACGTTGCTCGTGCGCTAC
GGCCGCACGCGCCCTGCTACGCTGCCGCTCGCCCACGACGACGCACGAGTCGTCACGATGAAGGAGCAGCTGGCCAGCGA
TCTCTCCGCGCCGCTCAAGCTCGCGGATCTCGCCGATACGGTGGGTCTGTCGCAGTTTCACGCGGCACGCCTGTTCGCGA
AAGTGACGGGCCTGCCGCCGCACGCGTGGCGCAACCAGGTGCGGCTGCAGCGCTCGCTCGGGCCGCTGCGCGCGGGTGCA
TCGGTGGCGGACGTCGCGGCCGCGAACGGCTTCACCGATCAAAGCCACTTCACCCGGCATTTCCGGCGCATGTTCGGCGT
GCCGCCGGGGCGCTGGCAGTCGTCGTAA

Upstream 100 bases:

>100_bases
GAAGAACAGCGTCACCGCCGTGCCGATGCCCGCCGGCACGACGATTCCCGTCCGTTGATTGCACGGTAAACTGTCAGGCT
CCGCCAGACCCCACATCAGC

Downstream 100 bases:

>100_bases
GCGCTCGCGGCCGCGCGACATCGCTCCGCGCGGATACGGCCATTAGCCCCAACGCCGCAACACGTCGGCCCAAGCGCAAG
AACGTACAAGCGGCCTGTCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTSPRFRDNARYWRTPLLPGADLLTAEYHDHAFTPHWHDAYTIPVIEAGAEAYRYRGSRHVAEAGSVPIINPGELHTGSR
AMDEGWRYRVMYAPVEFLHTLAENIAGCAQPLPWFDADVIRDRDLALRLSHAHRLLEANGDPLAAETAMLDALSTLLVRY
GRTRPATLPLAHDDARVVTMKEQLASDLSAPLKLADLADTVGLSQFHAARLFAKVTGLPPHAWRNQVRLQRSLGPLRAGA
SVADVAAANGFTDQSHFTRHFRRMFGVPPGRWQSS

Sequences:

>Translated_275_residues
MTSPRFRDNARYWRTPLLPGADLLTAEYHDHAFTPHWHDAYTIPVIEAGAEAYRYRGSRHVAEAGSVPIINPGELHTGSR
AMDEGWRYRVMYAPVEFLHTLAENIAGCAQPLPWFDADVIRDRDLALRLSHAHRLLEANGDPLAAETAMLDALSTLLVRY
GRTRPATLPLAHDDARVVTMKEQLASDLSAPLKLADLADTVGLSQFHAARLFAKVTGLPPHAWRNQVRLQRSLGPLRAGA
SVADVAAANGFTDQSHFTRHFRRMFGVPPGRWQSS
>Mature_274_residues
TSPRFRDNARYWRTPLLPGADLLTAEYHDHAFTPHWHDAYTIPVIEAGAEAYRYRGSRHVAEAGSVPIINPGELHTGSRA
MDEGWRYRVMYAPVEFLHTLAENIAGCAQPLPWFDADVIRDRDLALRLSHAHRLLEANGDPLAAETAMLDALSTLLVRYG
RTRPATLPLAHDDARVVTMKEQLASDLSAPLKLADLADTVGLSQFHAARLFAKVTGLPPHAWRNQVRLQRSLGPLRAGAS
VADVAAANGFTDQSHFTRHFRRMFGVPPGRWQSS

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30567; Mature: 30436

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPRFRDNARYWRTPLLPGADLLTAEYHDHAFTPHWHDAYTIPVIEAGAEAYRYRGSRH
CCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHCCCHH
VAEAGSVPIINPGELHTGSRAMDEGWRYRVMYAPVEFLHTLAENIAGCAQPLPWFDADVI
HHHCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHH
RDRDLALRLSHAHRLLEANGDPLAAETAMLDALSTLLVRYGRTRPATLPLAHDDARVVTM
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHH
KEQLASDLSAPLKLADLADTVGLSQFHAARLFAKVTGLPPHAWRNQVRLQRSLGPLRAGA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCC
SVADVAAANGFTDQSHFTRHFRRMFGVPPGRWQSS
CHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TSPRFRDNARYWRTPLLPGADLLTAEYHDHAFTPHWHDAYTIPVIEAGAEAYRYRGSRH
CCCCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHCCCHH
VAEAGSVPIINPGELHTGSRAMDEGWRYRVMYAPVEFLHTLAENIAGCAQPLPWFDADVI
HHHCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHH
RDRDLALRLSHAHRLLEANGDPLAAETAMLDALSTLLVRYGRTRPATLPLAHDDARVVTM
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHH
KEQLASDLSAPLKLADLADTVGLSQFHAARLFAKVTGLPPHAWRNQVRLQRSLGPLRAGA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCC
SVADVAAANGFTDQSHFTRHFRRMFGVPPGRWQSS
CHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]