| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is czcD [H]
Identifier: 186475489
GI number: 186475489
Start: 816337
End: 817458
Strand: Direct
Name: czcD [H]
Synonym: Bphy_0724
Alternate gene names: 186475489
Gene position: 816337-817458 (Clockwise)
Preceding gene: 186475488
Following gene: 186475490
Centisome position: 23.46
GC content: 66.76
Gene sequence:
>1122_bases ATGAAATACACCGCTCATCAGACGGACAGCGCCTCCGTGACGCATCAACCGAAGGCGCACGTGCACACCGATGCTTGCGA CCACGCGGGTCACGACGACGCAGACCACGCGCATTCGCATGGCGACGGCCACACGCACGACCAGGCTCACGACCACGCTG ACGCAAGCGGCGGCAAGGACGCGCATGCGCATCACGGGCACGGGCATGGTCACGGGCATCACCATCATCACCACGTGCCT GCCGCCGGACACGGCCGCGCGTTTGCGATCGCCGTCGCACTGAACGTGGCGATCGTCGTCGTGCAGGGCATGTATGGCGT GCTGGCCAATTCGACGGCGCTGCTCGCGGATGCCGGCCACAATCTCTCCGACGTGCTCGGCCTGCTGCTCGCGTGGGGCG CAACGTGGCTCGCGACGCGCCGGCCATCCGCGCGCTACACGTTCGGACTCGGCGGCTCGTCGATTCTCGCGAGCCTGCTC AATGCGGGGCTGCTGCTGTTCGCGTGTGGCGTGATCGTCGCGGAAGCGGTGGGGCGACTGATTCATCCTTCGCCAGTCGC GGGATTCGACGTGTTCATCGTCGCCTGCGTGGGCATGGTGGTGAACGGCGTGTCGGCGTGGCTCTTCATGCGCGGCCAGG GTGACGACCTGAACATCCGCGGCGCATTCCTGCATATGCTCGCCGACGCCGCCGTATCGGCCGCCGTCGCCGTCAGCGGC CTCGCCATCGTGTTCACCGGCTGGACGTGGCTCGATCCCGTCATGAGCCTCGTCGTCGTCGCGGTGATCGTCTACGGCAC GTGGGGTCTGTTGCGCGATTCTCTGAGCCTCGCATTGAACGGCGTGCCGCGCGGCGTCGACATGCAGAAGATTCGCGCCT ACCTCGCCGCGCAGCCGGGCGTCACTGACGTGCACGACCTGCACGTCTGGGCGCTGTCGACTACGGGCAACGCGCTGTCC GCGCATCTCGTGATTCCCGGCGGCCACCCTGGCGACCGCGTGATCGACGCAATCGTGGGCACGCTGCGCACCGAATTCGA CATGCATCACGCGACGCTGCAGGTCGATATGGGCACGACGCAGCATCGCTGTTCGCTTGATCACACGCCGCACGTGCATT GA
Upstream 100 bases:
>100_bases TCGCCGCCGACGGACACATCAGCGGCATGCTGACCGACATGCTCGAACACGTCGATGAACCTGTCAGCGACGCTTCCGCC GAATTCACGCAGGATCACGC
Downstream 100 bases:
>100_bases AGTCGGCCGATCTTCCGATGACGCGTTGATGCGCTGCGTCGTCGGCCGCGCGGCAGCGACGCAAATGCTCGGCGTACACT AGCGGACATGTCCGACTGCG
Product: cation diffusion facilitator family transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MKYTAHQTDSASVTHQPKAHVHTDACDHAGHDDADHAHSHGDGHTHDQAHDHADASGGKDAHAHHGHGHGHGHHHHHHVP AAGHGRAFAIAVALNVAIVVVQGMYGVLANSTALLADAGHNLSDVLGLLLAWGATWLATRRPSARYTFGLGGSSILASLL NAGLLLFACGVIVAEAVGRLIHPSPVAGFDVFIVACVGMVVNGVSAWLFMRGQGDDLNIRGAFLHMLADAAVSAAVAVSG LAIVFTGWTWLDPVMSLVVVAVIVYGTWGLLRDSLSLALNGVPRGVDMQKIRAYLAAQPGVTDVHDLHVWALSTTGNALS AHLVIPGGHPGDRVIDAIVGTLRTEFDMHHATLQVDMGTTQHRCSLDHTPHVH
Sequences:
>Translated_373_residues MKYTAHQTDSASVTHQPKAHVHTDACDHAGHDDADHAHSHGDGHTHDQAHDHADASGGKDAHAHHGHGHGHGHHHHHHVP AAGHGRAFAIAVALNVAIVVVQGMYGVLANSTALLADAGHNLSDVLGLLLAWGATWLATRRPSARYTFGLGGSSILASLL NAGLLLFACGVIVAEAVGRLIHPSPVAGFDVFIVACVGMVVNGVSAWLFMRGQGDDLNIRGAFLHMLADAAVSAAVAVSG LAIVFTGWTWLDPVMSLVVVAVIVYGTWGLLRDSLSLALNGVPRGVDMQKIRAYLAAQPGVTDVHDLHVWALSTTGNALS AHLVIPGGHPGDRVIDAIVGTLRTEFDMHHATLQVDMGTTQHRCSLDHTPHVH >Mature_373_residues MKYTAHQTDSASVTHQPKAHVHTDACDHAGHDDADHAHSHGDGHTHDQAHDHADASGGKDAHAHHGHGHGHGHHHHHHVP AAGHGRAFAIAVALNVAIVVVQGMYGVLANSTALLADAGHNLSDVLGLLLAWGATWLATRRPSARYTFGLGGSSILASLL NAGLLLFACGVIVAEAVGRLIHPSPVAGFDVFIVACVGMVVNGVSAWLFMRGQGDDLNIRGAFLHMLADAAVSAAVAVSG LAIVFTGWTWLDPVMSLVVVAVIVYGTWGLLRDSLSLALNGVPRGVDMQKIRAYLAAQPGVTDVHDLHVWALSTTGNALS AHLVIPGGHPGDRVIDAIVGTLRTEFDMHHATLQVDMGTTQHRCSLDHTPHVH
Specific function: Involved in divalent cation and potassium homeostasis in the cell. Catalyzes the active efflux of zinc, cadmium and cobalt, in exchange for potassium and H(+) ions [H]
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. SLC30A subfamily [H]
Homologues:
Organism=Homo sapiens, GI52352805, Length=322, Percent_Identity=25.4658385093168, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI21359890, Length=311, Percent_Identity=27.0096463022508, Blast_Score=113, Evalue=3e-25, Organism=Homo sapiens, GI64762489, Length=281, Percent_Identity=29.1814946619217, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI289803013, Length=264, Percent_Identity=29.9242424242424, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI289803009, Length=264, Percent_Identity=29.9242424242424, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI289803007, Length=264, Percent_Identity=29.9242424242424, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI289803003, Length=264, Percent_Identity=29.9242424242424, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI21361112, Length=318, Percent_Identity=27.0440251572327, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI14210520, Length=216, Percent_Identity=26.3888888888889, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI52351208, Length=158, Percent_Identity=27.8481012658228, Blast_Score=79, Evalue=6e-15, Organism=Escherichia coli, GI1786966, Length=280, Percent_Identity=33.2142857142857, Blast_Score=130, Evalue=1e-31, Organism=Caenorhabditis elegans, GI193210990, Length=320, Percent_Identity=29.0625, Blast_Score=137, Evalue=6e-33, Organism=Caenorhabditis elegans, GI17555794, Length=331, Percent_Identity=26.8882175226586, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17555796, Length=283, Percent_Identity=27.5618374558304, Blast_Score=111, Evalue=7e-25, Organism=Caenorhabditis elegans, GI32564488, Length=302, Percent_Identity=26.8211920529801, Blast_Score=93, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6320411, Length=176, Percent_Identity=35.2272727272727, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6323899, Length=120, Percent_Identity=34.1666666666667, Blast_Score=73, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6324892, Length=112, Percent_Identity=35.7142857142857, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI24583858, Length=329, Percent_Identity=23.1003039513678, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI24656728, Length=328, Percent_Identity=25.3048780487805, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI24656724, Length=328, Percent_Identity=25.3048780487805, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI24656720, Length=328, Percent_Identity=25.3048780487805, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI24656715, Length=328, Percent_Identity=25.3048780487805, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI21357035, Length=328, Percent_Identity=25.3048780487805, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI28574430, Length=153, Percent_Identity=27.4509803921569, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24584409, Length=156, Percent_Identity=26.9230769230769, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI24585900, Length=149, Percent_Identity=27.5167785234899, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI24585898, Length=149, Percent_Identity=27.5167785234899, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI24585896, Length=149, Percent_Identity=27.5167785234899, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI19921672, Length=149, Percent_Identity=27.5167785234899, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI24645863, Length=109, Percent_Identity=32.1100917431193, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 39155; Mature: 39155
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYTAHQTDSASVTHQPKAHVHTDACDHAGHDDADHAHSHGDGHTHDQAHDHADASGGKD CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC AHAHHGHGHGHGHHHHHHVPAAGHGRAFAIAVALNVAIVVVQGMYGVLANSTALLADAGH CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC NLSDVLGLLLAWGATWLATRRPSARYTFGLGGSSILASLLNAGLLLFACGVIVAEAVGRL CHHHHHHHHHHHCHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IHPSPVAGFDVFIVACVGMVVNGVSAWLFMRGQGDDLNIRGAFLHMLADAAVSAAVAVSG CCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC LAIVFTGWTWLDPVMSLVVVAVIVYGTWGLLRDSLSLALNGVPRGVDMQKIRAYLAAQPG EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC VTDVHDLHVWALSTTGNALSAHLVIPGGHPGDRVIDAIVGTLRTEFDMHHATLQVDMGTT CCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC QHRCSLDHTPHVH CCCCCCCCCCCCC >Mature Secondary Structure MKYTAHQTDSASVTHQPKAHVHTDACDHAGHDDADHAHSHGDGHTHDQAHDHADASGGKD CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC AHAHHGHGHGHGHHHHHHVPAAGHGRAFAIAVALNVAIVVVQGMYGVLANSTALLADAGH CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC NLSDVLGLLLAWGATWLATRRPSARYTFGLGGSSILASLLNAGLLLFACGVIVAEAVGRL CHHHHHHHHHHHCHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IHPSPVAGFDVFIVACVGMVVNGVSAWLFMRGQGDDLNIRGAFLHMLADAAVSAAVAVSG CCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC LAIVFTGWTWLDPVMSLVVVAVIVYGTWGLLRDSLSLALNGVPRGVDMQKIRAYLAAQPG EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC VTDVHDLHVWALSTTGNALSAHLVIPGGHPGDRVIDAIVGTLRTEFDMHHATLQVDMGTT CCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC QHRCSLDHTPHVH CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9308178; 9384377; 9099864 [H]