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The map label for this gene is ybaK [H]

Identifier: 186475293

GI number: 186475293

Start: 597309

End: 597836

Strand: Direct

Name: ybaK [H]

Synonym: Bphy_0525

Alternate gene names: 186475293

Gene position: 597309-597836 (Clockwise)

Preceding gene: 186475291

Following gene: 186475294

Centisome position: 17.17

GC content: 61.93

Gene sequence:

>528_bases
ATGGCCGTTGCGTCGCGCGGACATTACAATGCGCCGATGAGCAAATCCAGACACGTTTCCGAAACGCCCGCCACGCAGTT
CTTGCGCCGCCATAAGGTCAAGTTCGGTGAGCATCCGTACGACTACGTCGACCACGGGGGCACGGAAGAATCCGCGCGGC
AGCTGGGCGTCGATGAACACCACGTCGTCAAGACGCTGGTCATGGAAGACGAGCATGCCAGGCCGTTGATCGTCCTGATG
CACGGCGACCGTACGGTATCGACCAAGAACCTTGCGCGGCAGATCGGCGCGAAGCGCGTCGAGCCGTGCAAGCCGGAAGT
CGCGAGTCGGCATTCGGGTTACATGATCGGCGGCACTTCGCCGTTCGGCACGAAGAAGACGATGCCCGTCTACGTGGAAA
CGACCATACTCGACATGGACGGGATCTATATCAACGGCGGCCGGCGTGGCTTTCTGGTGAGCATCGCGCCCAGCGTGCTC
ACATCGCTGCTGGACGCGAAGCCCGTGCAGTGCGCGAGCGTCGATTGA

Upstream 100 bases:

>100_bases
GGGGTGAGCTGCGGGGAAGCGGCAAGCATGCCATTGCACGTGCAGTATCTCGAACGATCGTGCCATACCCCCGCTGCGCG
CACAATTGGCCATTCGGCAA

Downstream 100 bases:

>100_bases
CGGCTGAGGCTGGTGCGCACGCGTCGCGCACAACCGGTTTGTTAAAGCATGTCGAGGGTTCGGTAGAATGTGCGCCGTTG
TGCCAGCGCGGCGTGCGCGC

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MAVASRGHYNAPMSKSRHVSETPATQFLRRHKVKFGEHPYDYVDHGGTEESARQLGVDEHHVVKTLVMEDEHARPLIVLM
HGDRTVSTKNLARQIGAKRVEPCKPEVASRHSGYMIGGTSPFGTKKTMPVYVETTILDMDGIYINGGRRGFLVSIAPSVL
TSLLDAKPVQCASVD

Sequences:

>Translated_175_residues
MAVASRGHYNAPMSKSRHVSETPATQFLRRHKVKFGEHPYDYVDHGGTEESARQLGVDEHHVVKTLVMEDEHARPLIVLM
HGDRTVSTKNLARQIGAKRVEPCKPEVASRHSGYMIGGTSPFGTKKTMPVYVETTILDMDGIYINGGRRGFLVSIAPSVL
TSLLDAKPVQCASVD
>Mature_174_residues
AVASRGHYNAPMSKSRHVSETPATQFLRRHKVKFGEHPYDYVDHGGTEESARQLGVDEHHVVKTLVMEDEHARPLIVLMH
GDRTVSTKNLARQIGAKRVEPCKPEVASRHSGYMIGGTSPFGTKKTMPVYVETTILDMDGIYINGGRRGFLVSIAPSVLT
SLLDAKPVQCASVD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=160, Percent_Identity=33.125, Blast_Score=94, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 19266; Mature: 19135

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVASRGHYNAPMSKSRHVSETPATQFLRRHKVKFGEHPYDYVDHGGTEESARQLGVDEH
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHCCCCHH
HVVKTLVMEDEHARPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVASRHSGYMIGGTS
HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCEEEECCC
PFGTKKTMPVYVETTILDMDGIYINGGRRGFLVSIAPSVLTSLLDAKPVQCASVD
CCCCCCCCEEEEEEEEEECCCEEECCCCCEEEEEECHHHHHHHHCCCCCEEECCC
>Mature Secondary Structure 
AVASRGHYNAPMSKSRHVSETPATQFLRRHKVKFGEHPYDYVDHGGTEESARQLGVDEH
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHCCCCHH
HVVKTLVMEDEHARPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVASRHSGYMIGGTS
HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCEEEECCC
PFGTKKTMPVYVETTILDMDGIYINGGRRGFLVSIAPSVLTSLLDAKPVQCASVD
CCCCCCCCEEEEEEEEEECCCEEECCCCCEEEEEECHHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]