| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475128
Identifier: 186475128
GI number: 186475128
Start: 407255
End: 407689
Strand: Direct
Name: 186475128
Synonym: Bphy_0359
Alternate gene names: NA
Gene position: 407255-407689 (Clockwise)
Preceding gene: 186475127
Following gene: 186475129
Centisome position: 11.71
GC content: 62.3
Gene sequence:
>435_bases ATGATTGCGATTCGAAAGCTGAGCATGGTGGCAGTGATATGCGCGCTGGCGTCGGGTGTTGCGCTCGCGGATACGGTGGA GCTGAAGGCGGACCTTGAGCCGTCGAGCGAAGTGCCTCCGCGCGTGAGTCACGGACATGGCGCATTGGAGGCCACCTTCG ATACGTCGACCCGGACACTCAAGTGGACGACCACTTACGACGGTCTGTCGGGCCCGGTGACGATGGCGCACTTCCACGGT CCGGCGCCCGTCGGCCAGAACGCGAAGGTACAGGTCCCTATCGAGAAGAATGCGCTGGCGAGCCCGATGAAGGGTTCGGC GACACTCACGGAGCAACAGGTTACGGACCTGATGGCGGGCCAGTGGTACTTCAACATTCACACTGCGCAAAACCCGTCCG GCGAGATCCGCGGTCAGGTGCTGCCGGCAAATTAG
Upstream 100 bases:
>100_bases CTTCGAATTGCACTAGTATGTGCTGGCGCATGAGTTGGCACGGTTCGGTCTTTGCACATGAAGCGATGCCGGCGCGGCGC ACAAAGACTCGGAGAGAACA
Downstream 100 bases:
>100_bases ACGAATCAGGCAGGGCAACATAATGGCCGGAACCGCCAACAGCGGTTCCGGCCATTTGCGATTCGAACGAAGACCAGTCA TGCGCGCGTTCAGTAGAAGC
Product: CHRD domain-containing protein
Products: NA
Alternate protein names: CHRD Domain Containing Protein; Beta-Ig-H3/Fasciclin; Signal Peptide; CHRD Domain-Containing Superfamily; Chordin
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MIAIRKLSMVAVICALASGVALADTVELKADLEPSSEVPPRVSHGHGALEATFDTSTRTLKWTTTYDGLSGPVTMAHFHG PAPVGQNAKVQVPIEKNALASPMKGSATLTEQQVTDLMAGQWYFNIHTAQNPSGEIRGQVLPAN
Sequences:
>Translated_144_residues MIAIRKLSMVAVICALASGVALADTVELKADLEPSSEVPPRVSHGHGALEATFDTSTRTLKWTTTYDGLSGPVTMAHFHG PAPVGQNAKVQVPIEKNALASPMKGSATLTEQQVTDLMAGQWYFNIHTAQNPSGEIRGQVLPAN >Mature_144_residues MIAIRKLSMVAVICALASGVALADTVELKADLEPSSEVPPRVSHGHGALEATFDTSTRTLKWTTTYDGLSGPVTMAHFHG PAPVGQNAKVQVPIEKNALASPMKGSATLTEQQVTDLMAGQWYFNIHTAQNPSGEIRGQVLPAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15234; Mature: 15234
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS50933 CHRD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAIRKLSMVAVICALASGVALADTVELKADLEPSSEVPPRVSHGHGALEATFDTSTRTL CEEEHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEE KWTTTYDGLSGPVTMAHFHGPAPVGQNAKVQVPIEKNALASPMKGSATLTEQQVTDLMAG EEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHCC QWYFNIHTAQNPSGEIRGQVLPAN CEEEEEECCCCCCCCEEEEEEECC >Mature Secondary Structure MIAIRKLSMVAVICALASGVALADTVELKADLEPSSEVPPRVSHGHGALEATFDTSTRTL CEEEHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEE KWTTTYDGLSGPVTMAHFHGPAPVGQNAKVQVPIEKNALASPMKGSATLTEQQVTDLMAG EEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHCC QWYFNIHTAQNPSGEIRGQVLPAN CEEEEEECCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA