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The map label for this gene is ybeD [C]

Identifier: 186474982

GI number: 186474982

Start: 236305

End: 236574

Strand: Direct

Name: ybeD [C]

Synonym: Bphy_0213

Alternate gene names: 186474982

Gene position: 236305-236574 (Clockwise)

Preceding gene: 186474981

Following gene: 186474984

Centisome position: 6.79

GC content: 58.15

Gene sequence:

>270_bases
ATGAGTCCCGTAAACGAATCATTGATAGATTTTCCGTGCGATTTCCCTATCAAGGTGATGGGCAAGTCACACCCGGATTT
CCAGACGACGATTGTCGAAGTGATCCGCCAGTTCGACGGCGGGTTCGACGCGGAGCGTGTCGAAGTGCGGCCGTCCAGCG
GCGGCAACTACACCGGCTTGACGGTGACGGTGCGCGCGCTGAACCGTGAGCATCTGGATGACATTTACCGGGCGCTGACC
GGGCATCCGATGGTCAAGGTCGTGCTGTAA

Upstream 100 bases:

>100_bases
AAGCCGTAGACAAGTCGAAAAGCAAGAAGATCTGCGGCTTGCTTTTGCGCCGCGCGCATTCATATAGGGTGATTGCGTGC
GGTGAGTAAAGGAGTCGAGG

Downstream 100 bases:

>100_bases
TTCGTGGTTCGGTTCGGTGGGCAGGCGCGAGCGTCAGCGCTCCGCCTGCGTCGCCGGAAGCTGGACGTGCAACGCGTCCA
GTCCTTTTGTCCTGGCCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSPVNESLIDFPCDFPIKVMGKSHPDFQTTIVEVIRQFDGGFDAERVEVRPSSGGNYTGLTVTVRALNREHLDDIYRALT
GHPMVKVVL

Sequences:

>Translated_89_residues
MSPVNESLIDFPCDFPIKVMGKSHPDFQTTIVEVIRQFDGGFDAERVEVRPSSGGNYTGLTVTVRALNREHLDDIYRALT
GHPMVKVVL
>Mature_88_residues
SPVNESLIDFPCDFPIKVMGKSHPDFQTTIVEVIRQFDGGFDAERVEVRPSSGGNYTGLTVTVRALNREHLDDIYRALTG
HPMVKVVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y213_BURP8 (B2JC42)

Other databases:

- EMBL:   CP001043
- RefSeq:   YP_001856452.1
- ProteinModelPortal:   B2JC42
- SMR:   B2JC42
- GeneID:   6241715
- GenomeReviews:   CP001043_GR
- KEGG:   bph:Bphy_0213
- HOGENOM:   HBG297220
- OMA:   TATHIEQ
- ProtClustDB:   CLSK2337471
- HAMAP:   MF_00659
- InterPro:   IPR007454

Pfam domain/function: PF04359 DUF493

EC number: NA

Molecular weight: Translated: 9932; Mature: 9801

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPVNESLIDFPCDFPIKVMGKSHPDFQTTIVEVIRQFDGGFDAERVEVRPSSGGNYTGL
CCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
TVTVRALNREHLDDIYRALTGHPMVKVVL
EEEEEHHCHHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure 
SPVNESLIDFPCDFPIKVMGKSHPDFQTTIVEVIRQFDGGFDAERVEVRPSSGGNYTGL
CCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
TVTVRALNREHLDDIYRALTGHPMVKVVL
EEEEEHHCHHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA