| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is sbp [H]
Identifier: 186474938
GI number: 186474938
Start: 187790
End: 188815
Strand: Direct
Name: sbp [H]
Synonym: Bphy_0169
Alternate gene names: 186474938
Gene position: 187790-188815 (Clockwise)
Preceding gene: 186474936
Following gene: 186474951
Centisome position: 5.4
GC content: 62.67
Gene sequence:
>1026_bases ATGGCAGGCAGAGGGGATAAAGCGCGCGGGCTCGCGGCCGGCTTCACGGCTTTGACGCTTGCGCTTGGTGCTGCGCAGAA CGCGCATGCGGATGCATCGCTGTTGAACGTGTCGTATGACGTGACGCGCGAGCTCTATAAGGACATCAACACGGCGTTCG TCGCGGCGTACAAGCAGAAGAGCGGTGAGACGGTGGCAATCAGGCAGTCGCACGGCGCTTCAAGTGCGCAGGCGCTGTCG GTGCTGCAAGGCTTGCAGGCCGACGTCGTGACGATGAACCAGCCGAATGATATCGACCTGCTGGCCGAGCGCGGCCATCT CGTTCCCGACAACTGGCGCGCGCGTTTGCCGAACAACAGCGCGCCTTACACGACGACCATGGTGTTCCTCGTGCGCAAGG GCAATCCGAAGCACATCAAGGACTGGGACGATCTGGCGAAGCCTGGCGTGCAGGTTGTGATTCCGAATCCGAAGACGGCG GGTAACGGCCGCTACACGTACCTGGCCGCATGGGGTTACAAGAAACAGAACGGTGCGACGGACGCTCAGGCGCTCGATTT CGAGAAGTCGATCTTCCGCAACGTGCCCGTGCTCGACACGGGCGGCCGCGGCGCGACGACGACGTTTACGCAGCGGGGCA TCGGCGACGTGCTGGTGACATTCGAGAACGAGGTGTCGCTGATCGACACGGGCGTGGGTGCGGGCAGCTTCGAGGCCGTG TATCCATCGATCAGCATTCTTGCCGAGCCGCCCGTGACGATCGTGGACAAGGTGGTCGACAAGCGCGGCACGCGCAAGGA AGCGCAGGCGTATCTCGACTATCTGTACACCGCGCCCGCGCAGGAGATCATCGCGCAGCACCACTTGCGTCCGCGTGATC CCGCCGTGCTCGCAAAGCACGCGAGCGAGTTCAAGCCGCTGAAGACGTTCACCGTCGAGCAGGTGTTCGGCAGCTGGCAG AAAGCACAGCAAAGCCATTTCGCAGACGGCGGCACGTTCGATCAGATCATCGTCGACCGGAAGTAA
Upstream 100 bases:
>100_bases GCTGCCTGTTTTCCAGGAATCGCAAGAAGCGATCCGATAGAATCGCTGCTCCAGCCGCGTGATGCGGCCATTTGCTTCAT CATTGAAAAGCGGGGAAAAG
Downstream 100 bases:
>100_bases GCGCGGTATCGCGCGAAACGAAAAAGCCGCTTCGACATTCGAAGCGGCTTTTTCGTTGGAGGTGAGCGTAGGGGCGTACG TCGAAGCAACCCGGACAATC
Product: sulfate ABC transporter periplasmic sulfate-binding protein
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: Sulfate starvation-induced protein 2; SSI2 [H]
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MAGRGDKARGLAAGFTALTLALGAAQNAHADASLLNVSYDVTRELYKDINTAFVAAYKQKSGETVAIRQSHGASSAQALS VLQGLQADVVTMNQPNDIDLLAERGHLVPDNWRARLPNNSAPYTTTMVFLVRKGNPKHIKDWDDLAKPGVQVVIPNPKTA GNGRYTYLAAWGYKKQNGATDAQALDFEKSIFRNVPVLDTGGRGATTTFTQRGIGDVLVTFENEVSLIDTGVGAGSFEAV YPSISILAEPPVTIVDKVVDKRGTRKEAQAYLDYLYTAPAQEIIAQHHLRPRDPAVLAKHASEFKPLKTFTVEQVFGSWQ KAQQSHFADGGTFDQIIVDRK
Sequences:
>Translated_341_residues MAGRGDKARGLAAGFTALTLALGAAQNAHADASLLNVSYDVTRELYKDINTAFVAAYKQKSGETVAIRQSHGASSAQALS VLQGLQADVVTMNQPNDIDLLAERGHLVPDNWRARLPNNSAPYTTTMVFLVRKGNPKHIKDWDDLAKPGVQVVIPNPKTA GNGRYTYLAAWGYKKQNGATDAQALDFEKSIFRNVPVLDTGGRGATTTFTQRGIGDVLVTFENEVSLIDTGVGAGSFEAV YPSISILAEPPVTIVDKVVDKRGTRKEAQAYLDYLYTAPAQEIIAQHHLRPRDPAVLAKHASEFKPLKTFTVEQVFGSWQ KAQQSHFADGGTFDQIIVDRK >Mature_340_residues AGRGDKARGLAAGFTALTLALGAAQNAHADASLLNVSYDVTRELYKDINTAFVAAYKQKSGETVAIRQSHGASSAQALSV LQGLQADVVTMNQPNDIDLLAERGHLVPDNWRARLPNNSAPYTTTMVFLVRKGNPKHIKDWDDLAKPGVQVVIPNPKTAG NGRYTYLAAWGYKKQNGATDAQALDFEKSIFRNVPVLDTGGRGATTTFTQRGIGDVLVTFENEVSLIDTGVGAGSFEAVY PSISILAEPPVTIVDKVVDKRGTRKEAQAYLDYLYTAPAQEIIAQHHLRPRDPAVLAKHASEFKPLKTFTVEQVFGSWQK AQQSHFADGGTFDQIIVDRK
Specific function: This protein specifically binds sulfate and is involved in its transmembrane transport [H]
COG id: COG1613
COG function: function code P; ABC-type sulfate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic sulfate-binding protein family [H]
Homologues:
Organism=Escherichia coli, GI1790351, Length=320, Percent_Identity=55.625, Blast_Score=367, Evalue=1e-103, Organism=Escherichia coli, GI1788765, Length=313, Percent_Identity=49.5207667731629, Blast_Score=315, Evalue=2e-87,
Paralogues:
None
Copy number: 1240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 - InterPro: IPR000957 - InterPro: IPR005669 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 37009; Mature: 36878
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRGDKARGLAAGFTALTLALGAAQNAHADASLLNVSYDVTRELYKDINTAFVAAYKQK CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHC SGETVAIRQSHGASSAQALSVLQGLQADVVTMNQPNDIDLLAERGHLVPDNWRARLPNNS CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCC APYTTTMVFLVRKGNPKHIKDWDDLAKPGVQVVIPNPKTAGNGRYTYLAAWGYKKQNGAT CCCEEEEEEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCC DAQALDFEKSIFRNVPVLDTGGRGATTTFTQRGIGDVLVTFENEVSLIDTGVGAGSFEAV CHHHHHHHHHHHCCCCEEECCCCCCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCHHH YPSISILAEPPVTIVDKVVDKRGTRKEAQAYLDYLYTAPAQEIIAQHHLRPRDPAVLAKH CCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHH ASEFKPLKTFTVEQVFGSWQKAQQSHFADGGTFDQIIVDRK HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC >Mature Secondary Structure AGRGDKARGLAAGFTALTLALGAAQNAHADASLLNVSYDVTRELYKDINTAFVAAYKQK CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHC SGETVAIRQSHGASSAQALSVLQGLQADVVTMNQPNDIDLLAERGHLVPDNWRARLPNNS CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCC APYTTTMVFLVRKGNPKHIKDWDDLAKPGVQVVIPNPKTAGNGRYTYLAAWGYKKQNGAT CCCEEEEEEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCC DAQALDFEKSIFRNVPVLDTGGRGATTTFTQRGIGDVLVTFENEVSLIDTGVGAGSFEAV CHHHHHHHHHHHCCCCEEECCCCCCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCHHH YPSISILAEPPVTIVDKVVDKRGTRKEAQAYLDYLYTAPAQEIIAQHHLRPRDPAVLAKH CCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHH ASEFKPLKTFTVEQVFGSWQKAQQSHFADGGTFDQIIVDRK HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3158524; 2002055; 8346018; 9278503; 9298646; 8774726 [H]