Click here to switch to the map view.

The map label for this gene is 183222743

Identifier: 183222743

GI number: 183222743

Start: 3522044

End: 3522448

Strand: Reverse

Name: 183222743

Synonym: LEPBI_I3399

Alternate gene names: NA

Gene position: 3522448-3522044 (Counterclockwise)

Preceding gene: 183222744

Following gene: 183222742

Centisome position: 97.85

GC content: 26.17

Gene sequence:

>405_bases
ATGAATCATTATTTATTAGATACAAATATTTGTATTTATATCATTAATAAAAAACCTGAAAATGTTTACCAAAAATTCAA
AAAAATTAGTTTAGATAACATCTTCATTTCTAGCATCACTGAATTTGAATTAAGATATGGTGTTCAAAAAAGTCAAAAAG
CTGATAAAAATCAAAAAACTCTAAATGAATTTCTGGGTTACCTAAATGTCATAAACTTTGACTCAGAATCAGCATCGGTA
GCAGGAACTATCAGAACTAAACTAGAGAAAAAGGGAGAAATAATTGGACCGTATGATTTACTCATCGCTTCTCAGGCTAT
TGCTAGTGACATTATTTTAGTTACAAATAATGAAAAAGAGTATAAAAGAATTAAAGAACTTAAAATAGAAAACTGGATTA
ATTAA

Upstream 100 bases:

>100_bases
ACGATGCCGTTGACAGATTATGGAAGTCTCTAAATGATTTTTCGGATGATTTTCTCATTGAGAGAAATCAACCTAAGTCT
TTCGACAAACGAAATTCTAT

Downstream 100 bases:

>100_bases
TCTGCTGACCATCACATAACAGCACCTTAACGATACGCTTCGGCACAAGGCCTCTTTCGGCCGACGGCCAATTTCCTCCT
GGCATTCAACTTGCAAATAC

Product: PilT protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MNHYLLDTNICIYIINKKPENVYQKFKKISLDNIFISSITEFELRYGVQKSQKADKNQKTLNEFLGYLNVINFDSESASV
AGTIRTKLEKKGEIIGPYDLLIASQAIASDIILVTNNEKEYKRIKELKIENWIN

Sequences:

>Translated_134_residues
MNHYLLDTNICIYIINKKPENVYQKFKKISLDNIFISSITEFELRYGVQKSQKADKNQKTLNEFLGYLNVINFDSESASV
AGTIRTKLEKKGEIIGPYDLLIASQAIASDIILVTNNEKEYKRIKELKIENWIN
>Mature_134_residues
MNHYLLDTNICIYIINKKPENVYQKFKKISLDNIFISSITEFELRYGVQKSQKADKNQKTLNEFLGYLNVINFDSESASV
AGTIRTKLEKKGEIIGPYDLLIASQAIASDIILVTNNEKEYKRIKELKIENWIN

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 15508; Mature: 15508

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHYLLDTNICIYIINKKPENVYQKFKKISLDNIFISSITEFELRYGVQKSQKADKNQKT
CCCEEEECCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHH
LNEFLGYLNVINFDSESASVAGTIRTKLEKKGEIIGPYDLLIASQAIASDIILVTNNEKE
HHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCEEEEECCCHH
YKRIKELKIENWIN
HHHHHHHHHHHCCC
>Mature Secondary Structure
MNHYLLDTNICIYIINKKPENVYQKFKKISLDNIFISSITEFELRYGVQKSQKADKNQKT
CCCEEEECCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHH
LNEFLGYLNVINFDSESASVAGTIRTKLEKKGEIIGPYDLLIASQAIASDIILVTNNEKE
HHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCEEEEECCCHH
YKRIKELKIENWIN
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]