Click here to switch to the map view.

The map label for this gene is ywfA [H]

Identifier: 183222599

GI number: 183222599

Start: 3368029

End: 3369252

Strand: Reverse

Name: ywfA [H]

Synonym: LEPBI_I3254

Alternate gene names: 183222599

Gene position: 3369252-3368029 (Counterclockwise)

Preceding gene: 183222602

Following gene: 183222596

Centisome position: 93.6

GC content: 38.32

Gene sequence:

>1224_bases
ATGAGCCAACCTCTTACCCATCCGCTTCATACGATCCAAAAAGAAAGAGCCATCATATTTATTTTAGCCGCATTACAGTT
TTTACATGTTTTAGATTTTGTGATCATGATGCCCCTTGGGCCAGTATTTATGGAAAGTTTTAATATTGATGCTGCGGCAT
TTGGATTACTTGTGTCTTCCTATTCCATAAGTGCCGGAGTGTTTGGATTGATTGGTGCCTTGTTTTTAGATACCTTTGAT
CGTAAATTGAGTTTACTCGTTTTATTTTTTGGATTTTCATTTGGTACTTTTTTATGTGCCTTTGCCAATAGTTATGTTTT
TTTACTCATCGCACGGGTGATCGCAGGTGGCTTCGGGGGAATGATTGGTGCCACGGTACTTTCCATCATTGGAGATATCA
TACCAGTGTTTCGAAGGGGCACTGCTACTGGTGTTGTGATGGGTTCCTTTTCTGTTGCTTCGGTAGTGGGCGTTCCTTTT
GGATTAGAACTAGCTGAAAGATTCGGATGGCATTTTCCTTTTCTTTCTTTGGGGATTGCAGGTTTTTTAATTTTGCCCCT
TGGTTATAAATTATTACCATCGATTCGTTATCATCTCGATTCAGACATAAAAGTAAAACAATCTCAGGTTAAGTCCTTAC
TATTGGTTTTGAAGAAAAAAGAACATTTCCCTCCGTTTATTTTTATGGTCTTTTTAATGTTTGGTGGGTTTACAGTGATT
CCGTTTTTAAGTCCATTTTTAGTTTCTAATGTAGGTCTTTCCACAAAACAGATTCCATACATTTACTTCTTTGGTGGCCT
TGTCACGTTTTTCACAAGTAGATACATTGGTAAACTAGCCGATCGATTCGGGAAATTTATTATTTATCAAATCGTCACTG
TTCTTGCCATCATTCCAGTCATTTTGGTTGTCACTATGACAAAAACAGCCCTTCCCATGATTTTAGTTATCACAACCATT
TTTATGGTATTTGTTTCTGGTAGGATGGTCCCTGCCTTTGCGATGGTCACATCGGCTGTGGAGCCTCGGATTCGAGGGAG
TTTTATGTCTGTCAATTCAGCCATCCAACAGATTGCTTCAGGGGCCGCTTCTTACGTCGCAGGATTAATTCTTTACCAAA
ACGCAGATAAACAATTTGTGAATTATGAATTGGTAGGGATGATTTCGGTATTGAGTCTGTTGTTTAGTGTGTATTTAGCT
AAAAAAATTAAAATCTCAGGTTGA

Upstream 100 bases:

>100_bases
AAGCATATTTCATAAAGGAAATTTATTTCAGTTTAGAAAACTTGGCAATTCTTAAATAAATTGTTTTGGCAATTTTGACT
AGCTGGTCAATATTCGTATT

Downstream 100 bases:

>100_bases
ATATTTATTAACGTTAGCAAAAGTTAGATTATACTATAATTCTAATTTTCCAGTTTCAAGAAAATCGATGATCATACGTT
TTTGAGGAGGTGTGATCATC

Product: putative sugar transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSQPLTHPLHTIQKERAIIFILAALQFLHVLDFVIMMPLGPVFMESFNIDAAAFGLLVSSYSISAGVFGLIGALFLDTFD
RKLSLLVLFFGFSFGTFLCAFANSYVFLLIARVIAGGFGGMIGATVLSIIGDIIPVFRRGTATGVVMGSFSVASVVGVPF
GLELAERFGWHFPFLSLGIAGFLILPLGYKLLPSIRYHLDSDIKVKQSQVKSLLLVLKKKEHFPPFIFMVFLMFGGFTVI
PFLSPFLVSNVGLSTKQIPYIYFFGGLVTFFTSRYIGKLADRFGKFIIYQIVTVLAIIPVILVVTMTKTALPMILVITTI
FMVFVSGRMVPAFAMVTSAVEPRIRGSFMSVNSAIQQIASGAASYVAGLILYQNADKQFVNYELVGMISVLSLLFSVYLA
KKIKISG

Sequences:

>Translated_407_residues
MSQPLTHPLHTIQKERAIIFILAALQFLHVLDFVIMMPLGPVFMESFNIDAAAFGLLVSSYSISAGVFGLIGALFLDTFD
RKLSLLVLFFGFSFGTFLCAFANSYVFLLIARVIAGGFGGMIGATVLSIIGDIIPVFRRGTATGVVMGSFSVASVVGVPF
GLELAERFGWHFPFLSLGIAGFLILPLGYKLLPSIRYHLDSDIKVKQSQVKSLLLVLKKKEHFPPFIFMVFLMFGGFTVI
PFLSPFLVSNVGLSTKQIPYIYFFGGLVTFFTSRYIGKLADRFGKFIIYQIVTVLAIIPVILVVTMTKTALPMILVITTI
FMVFVSGRMVPAFAMVTSAVEPRIRGSFMSVNSAIQQIASGAASYVAGLILYQNADKQFVNYELVGMISVLSLLFSVYLA
KKIKISG
>Mature_406_residues
SQPLTHPLHTIQKERAIIFILAALQFLHVLDFVIMMPLGPVFMESFNIDAAAFGLLVSSYSISAGVFGLIGALFLDTFDR
KLSLLVLFFGFSFGTFLCAFANSYVFLLIARVIAGGFGGMIGATVLSIIGDIIPVFRRGTATGVVMGSFSVASVVGVPFG
LELAERFGWHFPFLSLGIAGFLILPLGYKLLPSIRYHLDSDIKVKQSQVKSLLLVLKKKEHFPPFIFMVFLMFGGFTVIP
FLSPFLVSNVGLSTKQIPYIYFFGGLVTFFTSRYIGKLADRFGKFIIYQIVTVLAIIPVILVVTMTKTALPMILVITTIF
MVFVSGRMVPAFAMVTSAVEPRIRGSFMSVNSAIQQIASGAASYVAGLILYQNADKQFVNYELVGMISVLSLLFSVYLAK
KIKISG

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=255, Percent_Identity=26.2745098039216, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44552; Mature: 44421

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQPLTHPLHTIQKERAIIFILAALQFLHVLDFVIMMPLGPVFMESFNIDAAAFGLLVSS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHH
YSISAGVFGLIGALFLDTFDRKLSLLVLFFGFSFGTFLCAFANSYVFLLIARVIAGGFGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
MIGATVLSIIGDIIPVFRRGTATGVVMGSFSVASVVGVPFGLELAERFGWHFPFLSLGIA
HHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHH
GFLILPLGYKLLPSIRYHLDSDIKVKQSQVKSLLLVLKKKEHFPPFIFMVFLMFGGFTVI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH
PFLSPFLVSNVGLSTKQIPYIYFFGGLVTFFTSRYIGKLADRFGKFIIYQIVTVLAIIPV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILVVTMTKTALPMILVITTIFMVFVSGRMVPAFAMVTSAVEPRIRGSFMSVNSAIQQIAS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
GAASYVAGLILYQNADKQFVNYELVGMISVLSLLFSVYLAKKIKISG
HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]