Click here to switch to the map view.

The map label for this gene is mcpC [H]

Identifier: 183222589

GI number: 183222589

Start: 3360363

End: 3361820

Strand: Reverse

Name: mcpC [H]

Synonym: LEPBI_I3244

Alternate gene names: 183222589

Gene position: 3361820-3360363 (Counterclockwise)

Preceding gene: 183222591

Following gene: 183222586

Centisome position: 93.39

GC content: 34.98

Gene sequence:

>1458_bases
ATGAAAATATTGATACGTATTATGTTTCCTTTTAAAACGAACGATTCTATAAAATTGAGTCTCATCCAAAATCGCAAATC
CATAAGAGAACACATCATTCGAAATACATCGATTGAAAATCCTATGGATAAAGAATTCCTTGAATTATTTGAAATCCAAA
AAAAAATTCGTTCTTTCATCGCATCGTCGGCTGATGGAATTGCAACTTCCATTTTAGGAACATCGACCAATTTAAAGAAC
ATTGAAAAAGTACAGTCGGAGTTTGTTTCGAGTTTGTCTCATTTCAGTGATATATCGATGAATTTAGCTAGTAGCGCTGA
AGAATTGGATGCCGTCATCCATTCCATTTCGTTTCAAATTTCAGAAACCTTAAAAACATTTGATCAAACTGGACAAAGAA
ACCAGGAACTAGTTAAAAGTTTGGAAAAAACTTCGAAGGAAATTGAAAATATCGCCAAGCAGTCGTTATGGGTAAAATTG
GAAAACCAAAAAAATGACGAAGAGTTTTTGTCCTTATACAATGATTTGAAAAAGATTAACGAGAACATTCAGCTTGTCAA
AGACATCTCTGATCGCACCAATTTACTTGCACTCAATGCATCCATCGAAGCAGCGAGGGCAGGTGAGGGTGGACGTGGAT
TTTCTGTCGTTGCTGATGGTGTATCCAAACTCGCTGAAAATACGAAAATAGCAGTGAAAACAATCCAGGACTCTGCGGCA
CACATCAGAAATCGATTTTTGGAATTCCAGGAAAATTCAAAGGCGAGGACATCAGTTTTAGTTGAAATCATAGAAAAGAT
CCAAGGTATTGAAACTGCAATCATTGCCAATCGAAAGGAATCGAATTCTAATCTAAGTGAAATTCAAATTTTGATATCTC
AATTCCATGAATTAGAACTAAAATTACGAGAAGTGGGAAGTGCTTCTGCCAATATTGCAAATGATTCCACGAGTATCTCA
AATCAAGTGCATGTACTTTCTGATCACAGTATCCATTCAAAAACTGACTTCGATTCTATTTTTGCTAAAATTGAAGAAAC
AGTGAAACTCATTACAAATCAGAATTCAGTTTGGTTATTGGAATTTATTTTCCATAGAAGGATGGATCATATCCATTGGG
TGAAAGCTGTGGATGATGCAATCCAAACGAATTTAGTGCAAAATCTTCCTCAACTGAATCATACACTTTGTAAAATGGGA
TTATGGTATTACCAAAGTTCCGTTCTCGATCAAAATCAAAAACGAATCCATGAAAAATTAGAGGCCCCCCACCAGGAATT
ACACCAATGTGCGATACGGATCAAAGAAGCTATGCTTTTAGAAGATAAGGAAGCAGTGAAAACAGAAAGAACCAAATTAC
AAGAGTGTTTTTTGGTTCTTTCGAAAACATTTGATGAGTATATAAACTATTTGGAAGCTAAAACTTTAGAGAATCTAGAA
CTAACCTCAATTAATTGA

Upstream 100 bases:

>100_bases
AATGGATTCGCTTATTTTGTCAGATTTTCCTATCTATGGCAAGCTGGTTTTTTCAAATTTCAACCATTCGAAGTAAGAAA
ATGGTGAAGGAAAGAGTCCA

Downstream 100 bases:

>100_bases
GGCTAGTTGCTTTTTCTAAGAGTTTTGAAAGTTTAACAACGTTTTTATTTGTTGGGTCGATCGACTGAGCTCTGGTCACA
TAAGTGAGGGCTCTATCGAC

Product: putative chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MKILIRIMFPFKTNDSIKLSLIQNRKSIREHIIRNTSIENPMDKEFLELFEIQKKIRSFIASSADGIATSILGTSTNLKN
IEKVQSEFVSSLSHFSDISMNLASSAEELDAVIHSISFQISETLKTFDQTGQRNQELVKSLEKTSKEIENIAKQSLWVKL
ENQKNDEEFLSLYNDLKKINENIQLVKDISDRTNLLALNASIEAARAGEGGRGFSVVADGVSKLAENTKIAVKTIQDSAA
HIRNRFLEFQENSKARTSVLVEIIEKIQGIETAIIANRKESNSNLSEIQILISQFHELELKLREVGSASANIANDSTSIS
NQVHVLSDHSIHSKTDFDSIFAKIEETVKLITNQNSVWLLEFIFHRRMDHIHWVKAVDDAIQTNLVQNLPQLNHTLCKMG
LWYYQSSVLDQNQKRIHEKLEAPHQELHQCAIRIKEAMLLEDKEAVKTERTKLQECFLVLSKTFDEYINYLEAKTLENLE
LTSIN

Sequences:

>Translated_485_residues
MKILIRIMFPFKTNDSIKLSLIQNRKSIREHIIRNTSIENPMDKEFLELFEIQKKIRSFIASSADGIATSILGTSTNLKN
IEKVQSEFVSSLSHFSDISMNLASSAEELDAVIHSISFQISETLKTFDQTGQRNQELVKSLEKTSKEIENIAKQSLWVKL
ENQKNDEEFLSLYNDLKKINENIQLVKDISDRTNLLALNASIEAARAGEGGRGFSVVADGVSKLAENTKIAVKTIQDSAA
HIRNRFLEFQENSKARTSVLVEIIEKIQGIETAIIANRKESNSNLSEIQILISQFHELELKLREVGSASANIANDSTSIS
NQVHVLSDHSIHSKTDFDSIFAKIEETVKLITNQNSVWLLEFIFHRRMDHIHWVKAVDDAIQTNLVQNLPQLNHTLCKMG
LWYYQSSVLDQNQKRIHEKLEAPHQELHQCAIRIKEAMLLEDKEAVKTERTKLQECFLVLSKTFDEYINYLEAKTLENLE
LTSIN
>Mature_485_residues
MKILIRIMFPFKTNDSIKLSLIQNRKSIREHIIRNTSIENPMDKEFLELFEIQKKIRSFIASSADGIATSILGTSTNLKN
IEKVQSEFVSSLSHFSDISMNLASSAEELDAVIHSISFQISETLKTFDQTGQRNQELVKSLEKTSKEIENIAKQSLWVKL
ENQKNDEEFLSLYNDLKKINENIQLVKDISDRTNLLALNASIEAARAGEGGRGFSVVADGVSKLAENTKIAVKTIQDSAA
HIRNRFLEFQENSKARTSVLVEIIEKIQGIETAIIANRKESNSNLSEIQILISQFHELELKLREVGSASANIANDSTSIS
NQVHVLSDHSIHSKTDFDSIFAKIEETVKLITNQNSVWLLEFIFHRRMDHIHWVKAVDDAIQTNLVQNLPQLNHTLCKMG
LWYYQSSVLDQNQKRIHEKLEAPHQELHQCAIRIKEAMLLEDKEAVKTERTKLQECFLVLSKTFDEYINYLEAKTLENLE
LTSIN

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=164, Percent_Identity=31.0975609756098, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 55293; Mature: 55293

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIRIMFPFKTNDSIKLSLIQNRKSIREHIIRNTSIENPMDKEFLELFEIQKKIRSFI
CEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
ASSADGIATSILGTSTNLKNIEKVQSEFVSSLSHFSDISMNLASSAEELDAVIHSISFQI
HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SETLKTFDQTGQRNQELVKSLEKTSKEIENIAKQSLWVKLENQKNDEEFLSLYNDLKKIN
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHH
ENIQLVKDISDRTNLLALNASIEAARAGEGGRGFSVVADGVSKLAENTKIAVKTIQDSAA
HHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHH
HIRNRFLEFQENSKARTSVLVEIIEKIQGIETAIIANRKESNSNLSEIQILISQFHELEL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
KLREVGSASANIANDSTSISNQVHVLSDHSIHSKTDFDSIFAKIEETVKLITNQNSVWLL
HHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
EFIFHRRMDHIHWVKAVDDAIQTNLVQNLPQLNHTLCKMGLWYYQSSVLDQNQKRIHEKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EAPHQELHQCAIRIKEAMLLEDKEAVKTERTKLQECFLVLSKTFDEYINYLEAKTLENLE
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LTSIN
ECCCC
>Mature Secondary Structure
MKILIRIMFPFKTNDSIKLSLIQNRKSIREHIIRNTSIENPMDKEFLELFEIQKKIRSFI
CEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
ASSADGIATSILGTSTNLKNIEKVQSEFVSSLSHFSDISMNLASSAEELDAVIHSISFQI
HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SETLKTFDQTGQRNQELVKSLEKTSKEIENIAKQSLWVKLENQKNDEEFLSLYNDLKKIN
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHH
ENIQLVKDISDRTNLLALNASIEAARAGEGGRGFSVVADGVSKLAENTKIAVKTIQDSAA
HHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHH
HIRNRFLEFQENSKARTSVLVEIIEKIQGIETAIIANRKESNSNLSEIQILISQFHELEL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
KLREVGSASANIANDSTSISNQVHVLSDHSIHSKTDFDSIFAKIEETVKLITNQNSVWLL
HHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
EFIFHRRMDHIHWVKAVDDAIQTNLVQNLPQLNHTLCKMGLWYYQSSVLDQNQKRIHEKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EAPHQELHQCAIRIKEAMLLEDKEAVKTERTKLQECFLVLSKTFDEYINYLEAKTLENLE
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LTSIN
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9353924; 9384377 [H]