Click here to switch to the map view.

The map label for this gene is pal [H]

Identifier: 183222583

GI number: 183222583

Start: 3351205

End: 3353217

Strand: Reverse

Name: pal [H]

Synonym: LEPBI_I3238

Alternate gene names: 183222583

Gene position: 3353217-3351205 (Counterclockwise)

Preceding gene: 183222585

Following gene: 183222582

Centisome position: 93.15

GC content: 40.54

Gene sequence:

>2013_bases
ATGAAAAAAATCCTTGTTTCCTTAATCATTTCGGTGTTTCCACTCCTTGGCCAACCACTTCCGAAGGTGAAGGATGTAAG
GTTTTACCCACCACTCAACACCCAAAATGTGGAATACAATCCGATCATTTCCCCAACGGGAAGGTATTTGGTCTTCCAAT
CCAACAGGCCTGGTGGGGAAGGGGGGATGGATTTATGGATTTCGGAAAACTTAAGTTTTCCCGACCGAATGAAATTGCCT
GTTTGGTCTGCGCCGAAAAATTTTCGTGAGCTGAATACGACCAATTTTGAGGGTATGTTTTCCATTCTCTTTGATGAGGA
AGAAAAACCATACGAACTCTACTTTACTTCCGTAAGGGACAAGTCTCAAAAAGACAGCAAAAAGAATCGTGAAGGATATG
ACGGATTAAATCTTTATTATACGAAGATCAACCAAAGGACTGGGCTTTGGGCAATCCCTACTCATTTAAATGAAATCAAT
TCTAACTTCGAAGATAAGATGCCTGCCGTTTCGCCTGACGGATGTTCGGTTGTATTTTCCTCTAACAGACCAGGTGGGCT
TGGTGGGTTTGATTTATGGATCTCAAAACGCGAGCCAACGACAAAAGAGACAGAAAAAAGTCCAGACAAACCAAAAATCA
AATGCCGAGATGGGATTTGGCAAAAACCCATCTCGATGGGTCCTGTGATCAATACTGGGGAAGATGAAATCAGTCCCAAT
TTTCATTGGGATGGACTTCGGTTGTATTTTAGTTCCAACCGAGGGGACAAAAACCGGAAGTTTAGTTTTTATTATAGTGA
ATACAATGAATCGAGTGGGCAATTTGAAACGCCTAAGTTATTAGGAAATCCATTTAACACCAACCAACCTCTGTCAGGCG
AATCTACGGGGTTTCCATTTGATACACCTTCTGATTATTCCACTTATAGCCTTTGGGAAGAGAGCGATAATGAAGGGATA
TCTGTCACTTTTGATGACCTATGGTTTTATTTTGCATCAAATCGACCTGGTGGGGAAGGGCAATTTGATATATACCGAAC
AATGGTACCGGAAGACCTCAGACGTACATATGAGTTTGTTTTCCGAGGGTTAGTCCTTGATGGTTCGGAAGCGATCATGA
TTGGACTTGATTCCACGTTAAAAATCTATGATGATACCAAACCCATCCAGGTGATTACTTCCAAACGAATCGGTGGTGAC
CTTTCCTTGGAAGATGCAGAGAATTTTCGCACAACCATCAAAACAGGAAAATTGTACCGAGTGGAAGTTTCGTCTCCAGG
GTTTCATCCGACCGAGTTACTTCTTGACCTTCGTGGGAATGTGGGGAAAGACAAAGAACAATATTCCCAAATCATCCTAC
AACCCATAAGGCCCGTAAAGGACAATCGTCCTGACAAAACCATTCAAGGGATACGATTTGTCGTGAAAGATAAAAAAACA
GACCTTGTGATTCCCAATGCTATTTGTTTTTACTTTGATGATTTGACGAGGAAAGGAAAATCCTTATCGGCCGTGGATGG
TCATTTTGATTTAGACCAAACTCCTACAATGGATTTTGAAATCCTAGCAAGAGCCAAAGGATACAAAGAGGAAACCTTTT
TATTTTCCAAAGAGAAACTCGCCGAGATGTCAGGAAAAGAAACGGTTCTGTATCTTCGGAATGTAAAAGACTTTGATGAC
CTGTACAATACAATTATTTATTTCCCGTTCAATGAACGAACATTGAGTGATGAAGATAAGAAAAAATTGGATCTTTTGGC
AGACTTCCTCATCCATCACAAAAATGAAAAAGTTGAAATTGGTGGACACACTGACAATATAGGGAATAAAGAATACAACA
TCAATCTAAGTGAAGATAGAGCTCTCTCTGTATACCAATATTTACGTCTGAAGGGTGTTCCCAAAGAACGAATGAAGGTA
CAAGCGTATCATTATTCGCAACCCATTGCAGACAATGAAACAGAAGAAGGAAGATCTCGCAATAGACGTGTGAATTTCAA
GAAGATAGACTAA

Upstream 100 bases:

>100_bases
CAGCCATGTTTTAGAGGATTCCTTGGGATGCTCACTCTTAAAGCCATATTTTTCCCTTGGCAGAAAATTCCGTTCGGCCG
ATACATAGGAGAGACGGCAG

Downstream 100 bases:

>100_bases
TATGATCAATCGAGTCAAAATTCATTTCGACCAAGAACGCGAGTATGTTCCACTAGAAGCTGTCCGTGCGTTACCAGAGT
TTTTCAAACAGATGATGGCA

Product: putative outer-membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MKKILVSLIISVFPLLGQPLPKVKDVRFYPPLNTQNVEYNPIISPTGRYLVFQSNRPGGEGGMDLWISENLSFPDRMKLP
VWSAPKNFRELNTTNFEGMFSILFDEEEKPYELYFTSVRDKSQKDSKKNREGYDGLNLYYTKINQRTGLWAIPTHLNEIN
SNFEDKMPAVSPDGCSVVFSSNRPGGLGGFDLWISKREPTTKETEKSPDKPKIKCRDGIWQKPISMGPVINTGEDEISPN
FHWDGLRLYFSSNRGDKNRKFSFYYSEYNESSGQFETPKLLGNPFNTNQPLSGESTGFPFDTPSDYSTYSLWEESDNEGI
SVTFDDLWFYFASNRPGGEGQFDIYRTMVPEDLRRTYEFVFRGLVLDGSEAIMIGLDSTLKIYDDTKPIQVITSKRIGGD
LSLEDAENFRTTIKTGKLYRVEVSSPGFHPTELLLDLRGNVGKDKEQYSQIILQPIRPVKDNRPDKTIQGIRFVVKDKKT
DLVIPNAICFYFDDLTRKGKSLSAVDGHFDLDQTPTMDFEILARAKGYKEETFLFSKEKLAEMSGKETVLYLRNVKDFDD
LYNTIIYFPFNERTLSDEDKKKLDLLADFLIHHKNEKVEIGGHTDNIGNKEYNINLSEDRALSVYQYLRLKGVPKERMKV
QAYHYSQPIADNETEEGRSRNRRVNFKKID

Sequences:

>Translated_670_residues
MKKILVSLIISVFPLLGQPLPKVKDVRFYPPLNTQNVEYNPIISPTGRYLVFQSNRPGGEGGMDLWISENLSFPDRMKLP
VWSAPKNFRELNTTNFEGMFSILFDEEEKPYELYFTSVRDKSQKDSKKNREGYDGLNLYYTKINQRTGLWAIPTHLNEIN
SNFEDKMPAVSPDGCSVVFSSNRPGGLGGFDLWISKREPTTKETEKSPDKPKIKCRDGIWQKPISMGPVINTGEDEISPN
FHWDGLRLYFSSNRGDKNRKFSFYYSEYNESSGQFETPKLLGNPFNTNQPLSGESTGFPFDTPSDYSTYSLWEESDNEGI
SVTFDDLWFYFASNRPGGEGQFDIYRTMVPEDLRRTYEFVFRGLVLDGSEAIMIGLDSTLKIYDDTKPIQVITSKRIGGD
LSLEDAENFRTTIKTGKLYRVEVSSPGFHPTELLLDLRGNVGKDKEQYSQIILQPIRPVKDNRPDKTIQGIRFVVKDKKT
DLVIPNAICFYFDDLTRKGKSLSAVDGHFDLDQTPTMDFEILARAKGYKEETFLFSKEKLAEMSGKETVLYLRNVKDFDD
LYNTIIYFPFNERTLSDEDKKKLDLLADFLIHHKNEKVEIGGHTDNIGNKEYNINLSEDRALSVYQYLRLKGVPKERMKV
QAYHYSQPIADNETEEGRSRNRRVNFKKID
>Mature_670_residues
MKKILVSLIISVFPLLGQPLPKVKDVRFYPPLNTQNVEYNPIISPTGRYLVFQSNRPGGEGGMDLWISENLSFPDRMKLP
VWSAPKNFRELNTTNFEGMFSILFDEEEKPYELYFTSVRDKSQKDSKKNREGYDGLNLYYTKINQRTGLWAIPTHLNEIN
SNFEDKMPAVSPDGCSVVFSSNRPGGLGGFDLWISKREPTTKETEKSPDKPKIKCRDGIWQKPISMGPVINTGEDEISPN
FHWDGLRLYFSSNRGDKNRKFSFYYSEYNESSGQFETPKLLGNPFNTNQPLSGESTGFPFDTPSDYSTYSLWEESDNEGI
SVTFDDLWFYFASNRPGGEGQFDIYRTMVPEDLRRTYEFVFRGLVLDGSEAIMIGLDSTLKIYDDTKPIQVITSKRIGGD
LSLEDAENFRTTIKTGKLYRVEVSSPGFHPTELLLDLRGNVGKDKEQYSQIILQPIRPVKDNRPDKTIQGIRFVVKDKKT
DLVIPNAICFYFDDLTRKGKSLSAVDGHFDLDQTPTMDFEILARAKGYKEETFLFSKEKLAEMSGKETVLYLRNVKDFDD
LYNTIIYFPFNERTLSDEDKKKLDLLADFLIHHKNEKVEIGGHTDNIGNKEYNINLSEDRALSVYQYLRLKGVPKERMKV
QAYHYSQPIADNETEEGRSRNRRVNFKKID

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=101, Percent_Identity=35.6435643564356, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 77111; Mature: 77111

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILVSLIISVFPLLGQPLPKVKDVRFYPPLNTQNVEYNPIISPTGRYLVFQSNRPGGE
CHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEECCEECCCCCEEEEECCCCCCC
GGMDLWISENLSFPDRMKLPVWSAPKNFRELNTTNFEGMFSILFDEEEKPYELYFTSVRD
CCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCEEEEEEECCC
KSQKDSKKNREGYDGLNLYYTKINQRTGLWAIPTHLNEINSNFEDKMPAVSPDGCSVVFS
CCHHHHHHCCCCCCCCEEEEEEECCCCCEEECCCHHHHHCCCHHHCCCCCCCCCCEEEEC
SNRPGGLGGFDLWISKREPTTKETEKSPDKPKIKCRDGIWQKPISMGPVINTGEDEISPN
CCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC
FHWDGLRLYFSSNRGDKNRKFSFYYSEYNESSGQFETPKLLGNPFNTNQPLSGESTGFPF
CCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
DTPSDYSTYSLWEESDNEGISVTFDDLWFYFASNRPGGEGQFDIYRTMVPEDLRRTYEFV
CCCCCCCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHH
FRGLVLDGSEAIMIGLDSTLKIYDDTKPIQVITSKRIGGDLSLEDAENFRTTIKTGKLYR
HHHEEECCCCEEEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHEEECCEEEE
VEVSSPGFHPTELLLDLRGNVGKDKEQYSQIILQPIRPVKDNRPDKTIQGIRFVVKDKKT
EEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHEEEEEECCCC
DLVIPNAICFYFDDLTRKGKSLSAVDGHFDLDQTPTMDFEILARAKGYKEETFLFSKEKL
CEECCCHHEEEEHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHEEECHHHH
AEMSGKETVLYLRNVKDFDDLYNTIIYFPFNERTLSDEDKKKLDLLADFLIHHKNEKVEI
HHCCCCCEEEEEECCCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
GGHTDNIGNKEYNINLSEDRALSVYQYLRLKGVPKERMKVQAYHYSQPIADNETEEGRSR
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHEEEEEECCCCCCCCCCHHHHHH
NRRVNFKKID
CCCCCEEECC
>Mature Secondary Structure
MKKILVSLIISVFPLLGQPLPKVKDVRFYPPLNTQNVEYNPIISPTGRYLVFQSNRPGGE
CHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEECCEECCCCCEEEEECCCCCCC
GGMDLWISENLSFPDRMKLPVWSAPKNFRELNTTNFEGMFSILFDEEEKPYELYFTSVRD
CCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCEEEEEEECCC
KSQKDSKKNREGYDGLNLYYTKINQRTGLWAIPTHLNEINSNFEDKMPAVSPDGCSVVFS
CCHHHHHHCCCCCCCCEEEEEEECCCCCEEECCCHHHHHCCCHHHCCCCCCCCCCEEEEC
SNRPGGLGGFDLWISKREPTTKETEKSPDKPKIKCRDGIWQKPISMGPVINTGEDEISPN
CCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC
FHWDGLRLYFSSNRGDKNRKFSFYYSEYNESSGQFETPKLLGNPFNTNQPLSGESTGFPF
CCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
DTPSDYSTYSLWEESDNEGISVTFDDLWFYFASNRPGGEGQFDIYRTMVPEDLRRTYEFV
CCCCCCCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHH
FRGLVLDGSEAIMIGLDSTLKIYDDTKPIQVITSKRIGGDLSLEDAENFRTTIKTGKLYR
HHHEEECCCCEEEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHEEECCEEEE
VEVSSPGFHPTELLLDLRGNVGKDKEQYSQIILQPIRPVKDNRPDKTIQGIRFVVKDKKT
EEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHEEEEEECCCC
DLVIPNAICFYFDDLTRKGKSLSAVDGHFDLDQTPTMDFEILARAKGYKEETFLFSKEKL
CEECCCHHEEEEHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHEEECHHHH
AEMSGKETVLYLRNVKDFDDLYNTIIYFPFNERTLSDEDKKKLDLLADFLIHHKNEKVEI
HHCCCCCEEEEEECCCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
GGHTDNIGNKEYNINLSEDRALSVYQYLRLKGVPKERMKVQAYHYSQPIADNETEEGRSR
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHEEEEEECCCCCCCCCCHHHHHH
NRRVNFKKID
CCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]