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The map label for this gene is rnk [H]

Identifier: 183222143

GI number: 183222143

Start: 2882543

End: 2882959

Strand: Direct

Name: rnk [H]

Synonym: LEPBI_I2786

Alternate gene names: 183222143

Gene position: 2882543-2882959 (Clockwise)

Preceding gene: 183222139

Following gene: 183222146

Centisome position: 80.08

GC content: 32.61

Gene sequence:

>417_bases
ATGAAAACAAAGAAAAAAATTTCGATCACGAATTTAGATTATATTCGATTAAAAAAAATGATTTTAGAGTATTCGAAACG
AAACAAAACTGATGCGAATGTACAAGATTTACTCGGAGAAATTGAACGTGCTCAAAAAGTAGATTCCAAACAAATTCCAT
CCAATGTAGTGACAATGAACTCTGTCATTGAAATCAAAAACTTGGAAGGGATAGAATTTAAGGAATTCCGATTGGTATAT
CCTGAGGATTCAAATCTGGATCAAAATCAAATCTCTATCTTGGCTCCAATTGCAACTGCAAGTATTGGATACAAAACGGG
TGATGTCATTTTTTGGAATGTTCCAGATGGTGTTTATCGATTTCAAATTACTGAGATTAAATACCAACCAGAAGCCAATG
GCGATTTCCATTTATAA

Upstream 100 bases:

>100_bases
GGCGTTCAGAAATGCAAAACAAGTGAATAGGTTCCTATTGACAGAAATACAGTCCTTTATAAAATCAAAGTTTTGTCTGA
GACAAAAATGGAGAATTAGA

Downstream 100 bases:

>100_bases
TTTAAAAAACGGACAGTAATGTCCGTCTTTTTCAACTCATCAACGTTTACAATTGGTATAAATAAAATAAAAAGGAAGAC
GGTAACTTAAAAAAATAGCC

Product: putative transcription elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKTKKKISITNLDYIRLKKMILEYSKRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSVIEIKNLEGIEFKEFRLVY
PEDSNLDQNQISILAPIATASIGYKTGDVIFWNVPDGVYRFQITEIKYQPEANGDFHL

Sequences:

>Translated_138_residues
MKTKKKISITNLDYIRLKKMILEYSKRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSVIEIKNLEGIEFKEFRLVY
PEDSNLDQNQISILAPIATASIGYKTGDVIFWNVPDGVYRFQITEIKYQPEANGDFHL
>Mature_138_residues
MKTKKKISITNLDYIRLKKMILEYSKRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSVIEIKNLEGIEFKEFRLVY
PEDSNLDQNQISILAPIATASIGYKTGDVIFWNVPDGVYRFQITEIKYQPEANGDFHL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=139, Percent_Identity=35.2517985611511, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15883; Mature: 15883

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKKKISITNLDYIRLKKMILEYSKRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMN
CCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
SVIEIKNLEGIEFKEFRLVYPEDSNLDQNQISILAPIATASIGYKTGDVIFWNVPDGVYR
CEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEHHHCCCCCCCCEEEEECCCCEEE
FQITEIKYQPEANGDFHL
EEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKTKKKISITNLDYIRLKKMILEYSKRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMN
CCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
SVIEIKNLEGIEFKEFRLVYPEDSNLDQNQISILAPIATASIGYKTGDVIFWNVPDGVYR
CEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEHHHCCCCCCCCEEEEECCCCEEE
FQITEIKYQPEANGDFHL
EEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]