| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is rsbU [H]
Identifier: 183221819
GI number: 183221819
Start: 2526817
End: 2528784
Strand: Direct
Name: rsbU [H]
Synonym: LEPBI_I2450
Alternate gene names: 183221819
Gene position: 2526817-2528784 (Clockwise)
Preceding gene: 183221816
Following gene: 183221824
Centisome position: 70.2
GC content: 34.2
Gene sequence:
>1968_bases TTGAAACCCCATGGAAAATGGAAGTTAGTGCAATTTTTTAAGAGAAGTAGCATTCTCCTCCTTTTCGGATTCTTTGTGAA CCCGCTTGTTTCTCTCCCCCTCTCTGTTGAAGAAACAAACAATTACAGGGACATCGGAAAGTATTTCGAATACACGATTC CTAAGAACCCAGAATCTACATTATCCGATCTCCTAAAGGAAGACACCTTGTGGCGTCCCAATCCTAAAAAAGTCATTTCT TTCCCAAGATCGAAACATCCTGTATGGCTAAAAATTACTTTGATCCATTATGGAAGTATTCCTCATACTTTCTTTTTACA CCTTTCCAATCCCGTTGTTGATCTTTTTGAACTACACACAGAAATCAATGGGCAATGGAGAACTCAATGGTCCGGCGAAC AAGTATTACAGAAAAATAAGCCAATATATTCTCATATGTCTGCATTTCCGATCACTCTGTCTCCGAATGAATCAAGGACA ATTTATTTAAAAATTAAATCAGACAATCCTATTTTTAGTTTTGTATCTTTCTATAATTCCAGAACTTTCATTGCATATTC GAAAAAACAGGACATTTTTTTTGCCGGTTACTTTGGTGCTGGGTTTATGATGTTTTTTTTCAGTCTATTTTTGGCACATA CCTTACGTTATAAAAAATTCTTTTACTTTTTCTTTTATTTAGCAACTGTATTACTTTTAAATACTTATTCAACAGGATTC ATTCAATATTTTGAATTCGGGAATTCTAATTCTTGGAAAAATTATTTATTCCCTATCACCATCCACTTATCCTCCATTTT TGGATTATTGTTTACACTAGAATTTTTAGAGACGAAGGCATTTAGTTCGATTTTAAATCGAATCACTATTAGTTATATTT TAATCCTCACCTTTGTCTTATTATTCATTTTTGTATTAGACCTACGAAATTTTATACAACTGACGGTGTTTCTGATCATC ATTCCTATTTTCCTTGCTATATTCATATCTATCTTTACTTTATTTAAAAGTAAAAAGAAGTTAGAAGTTATTTTGTTTCT TTTAGCATTTGGAGTTTTATTATTCGGCGCAGCTTTAAATACCTTTACTGTTCAGGGATTCCTGAAACCAATCCACTTCG CCTCCTATTCACTACCTCTAGGATCAGCTTTAGAAGTTTTTTTCCTATCTCTTGCCCTCGTTTTGCGAGTTTCCGATTAT CGAAAATCAAATGAACAAAAACAAGAAATAGATTTACAATTAAAAATAGCACAAAAATTACAAAATGGTTTGTTACCAAA AAAAAGGTCACACGCCTTAGGTTACCCATTGGGATTTCGATACCTACCTGCAACAGACATAGGAGGAGATTTTGTAGAAA TCATTGAAAAAGAAAAAGAATTGGGATTGTTTTTATGTGATGTATCTGGCCACGGAATACCTGCTGCCATGATTGCATCT ATGACAAAAGTATCATTGGAAATATGGAGTGATATACTAAATAAACCGGCATTAGCTGCTGATAAAATCAGAAGATCACT TTTAAGTTTACTGTCTGGTCATTTTTTGAGCGCCTTTTTTGTTTACATTCAACCTGAAGAGAGAATCCTAAAGATAGCCA ACGCAGGTCATCTGCCACTTCTACACTTAGATCGAAACGGGAATATCACAACATATACCAGTTATGGTAGAGCCATTAAC GAATTTGTACCATCGGATATTAAAGAAAAAAGTTTCCAATTACCAGTCGAAGGCACCTTGATTCTATTTACAGATGGTGT GATCGAAGCTCGAAATGTGCACACTGGAGAATTGTTTGGAGAAGAACGTTTCTATCAATTGATCCAAGCACTCGCAAAAA AACATCCACAAGTGATTTGCGATTCCGTAATTGAACAAATAGAAAAATTTCAGAAATCAAAAAGATCCGACGATGATATC ACCATACTCGCATTGTCATTGGATTCCAGTTTTGAAGTATCATTGTAA
Upstream 100 bases:
>100_bases ACAAGTTTTTTTTGAAAAGGGCTTTCAGGGAAGCAAACTTCGTCGAATCCTAGAGAAGGAGAGTGGTAATCTCGAACTCT GAAATTACCGGAAAGCAAAT
Downstream 100 bases:
>100_bases TTTTTAAGAACCAATCCAGAAGTGTAGTTGATTCAATAAATCATTTGGGTTGAACGGTTTGGAAATATAGTCATTCATTC CAACTGACTTTATTTGCGCG
Product: putative serine phosphatase RsbU regulator
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 655; Mature: 655
Protein sequence:
>655_residues MKPHGKWKLVQFFKRSSILLLFGFFVNPLVSLPLSVEETNNYRDIGKYFEYTIPKNPESTLSDLLKEDTLWRPNPKKVIS FPRSKHPVWLKITLIHYGSIPHTFFLHLSNPVVDLFELHTEINGQWRTQWSGEQVLQKNKPIYSHMSAFPITLSPNESRT IYLKIKSDNPIFSFVSFYNSRTFIAYSKKQDIFFAGYFGAGFMMFFFSLFLAHTLRYKKFFYFFFYLATVLLLNTYSTGF IQYFEFGNSNSWKNYLFPITIHLSSIFGLLFTLEFLETKAFSSILNRITISYILILTFVLLFIFVLDLRNFIQLTVFLII IPIFLAIFISIFTLFKSKKKLEVILFLLAFGVLLFGAALNTFTVQGFLKPIHFASYSLPLGSALEVFFLSLALVLRVSDY RKSNEQKQEIDLQLKIAQKLQNGLLPKKRSHALGYPLGFRYLPATDIGGDFVEIIEKEKELGLFLCDVSGHGIPAAMIAS MTKVSLEIWSDILNKPALAADKIRRSLLSLLSGHFLSAFFVYIQPEERILKIANAGHLPLLHLDRNGNITTYTSYGRAIN EFVPSDIKEKSFQLPVEGTLILFTDGVIEARNVHTGELFGEERFYQLIQALAKKHPQVICDSVIEQIEKFQKSKRSDDDI TILALSLDSSFEVSL
Sequences:
>Translated_655_residues MKPHGKWKLVQFFKRSSILLLFGFFVNPLVSLPLSVEETNNYRDIGKYFEYTIPKNPESTLSDLLKEDTLWRPNPKKVIS FPRSKHPVWLKITLIHYGSIPHTFFLHLSNPVVDLFELHTEINGQWRTQWSGEQVLQKNKPIYSHMSAFPITLSPNESRT IYLKIKSDNPIFSFVSFYNSRTFIAYSKKQDIFFAGYFGAGFMMFFFSLFLAHTLRYKKFFYFFFYLATVLLLNTYSTGF IQYFEFGNSNSWKNYLFPITIHLSSIFGLLFTLEFLETKAFSSILNRITISYILILTFVLLFIFVLDLRNFIQLTVFLII IPIFLAIFISIFTLFKSKKKLEVILFLLAFGVLLFGAALNTFTVQGFLKPIHFASYSLPLGSALEVFFLSLALVLRVSDY RKSNEQKQEIDLQLKIAQKLQNGLLPKKRSHALGYPLGFRYLPATDIGGDFVEIIEKEKELGLFLCDVSGHGIPAAMIAS MTKVSLEIWSDILNKPALAADKIRRSLLSLLSGHFLSAFFVYIQPEERILKIANAGHLPLLHLDRNGNITTYTSYGRAIN EFVPSDIKEKSFQLPVEGTLILFTDGVIEARNVHTGELFGEERFYQLIQALAKKHPQVICDSVIEQIEKFQKSKRSDDDI TILALSLDSSFEVSL >Mature_655_residues MKPHGKWKLVQFFKRSSILLLFGFFVNPLVSLPLSVEETNNYRDIGKYFEYTIPKNPESTLSDLLKEDTLWRPNPKKVIS FPRSKHPVWLKITLIHYGSIPHTFFLHLSNPVVDLFELHTEINGQWRTQWSGEQVLQKNKPIYSHMSAFPITLSPNESRT IYLKIKSDNPIFSFVSFYNSRTFIAYSKKQDIFFAGYFGAGFMMFFFSLFLAHTLRYKKFFYFFFYLATVLLLNTYSTGF IQYFEFGNSNSWKNYLFPITIHLSSIFGLLFTLEFLETKAFSSILNRITISYILILTFVLLFIFVLDLRNFIQLTVFLII IPIFLAIFISIFTLFKSKKKLEVILFLLAFGVLLFGAALNTFTVQGFLKPIHFASYSLPLGSALEVFFLSLALVLRVSDY RKSNEQKQEIDLQLKIAQKLQNGLLPKKRSHALGYPLGFRYLPATDIGGDFVEIIEKEKELGLFLCDVSGHGIPAAMIAS MTKVSLEIWSDILNKPALAADKIRRSLLSLLSGHFLSAFFVYIQPEERILKIANAGHLPLLHLDRNGNITTYTSYGRAIN EFVPSDIKEKSFQLPVEGTLILFTDGVIEARNVHTGELFGEERFYQLIQALAKKHPQVICDSVIEQIEKFQKSKRSDDDI TILALSLDSSFEVSL
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 75263; Mature: 75263
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPHGKWKLVQFFKRSSILLLFGFFVNPLVSLPLSVEETNNYRDIGKYFEYTIPKNPEST CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHEECCCCCCHHH LSDLLKEDTLWRPNPKKVISFPRSKHPVWLKITLIHYGSIPHTFFLHLSNPVVDLFELHT HHHHHHHCCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHH EINGQWRTQWSGEQVLQKNKPIYSHMSAFPITLSPNESRTIYLKIKSDNPIFSFVSFYNS HCCCCEEECCCHHHHHHCCCCHHHHCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHCC RTFIAYSKKQDIFFAGYFGAGFMMFFFSLFLAHTLRYKKFFYFFFYLATVLLLNTYSTGF CEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC IQYFEFGNSNSWKNYLFPITIHLSSIFGLLFTLEFLETKAFSSILNRITISYILILTFVL EEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFIFVLDLRNFIQLTVFLIIIPIFLAIFISIFTLFKSKKKLEVILFLLAFGVLLFGAALN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH TFTVQGFLKPIHFASYSLPLGSALEVFFLSLALVLRVSDYRKSNEQKQEIDLQLKIAQKL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH QNGLLPKKRSHALGYPLGFRYLPATDIGGDFVEIIEKEKELGLFLCDVSGHGIPAAMIAS HHCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHH MTKVSLEIWSDILNKPALAADKIRRSLLSLLSGHFLSAFFVYIQPEERILKIANAGHLPL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHCCCCCCEE LHLDRNGNITTYTSYGRAINEFVPSDIKEKSFQLPVEGTLILFTDGVIEARNVHTGELFG EEECCCCCEEEEEHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEECCCEEECCCCCHHHCC EERFYQLIQALAKKHPQVICDSVIEQIEKFQKSKRSDDDITILALSLDSSFEVSL HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEECC >Mature Secondary Structure MKPHGKWKLVQFFKRSSILLLFGFFVNPLVSLPLSVEETNNYRDIGKYFEYTIPKNPEST CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHEECCCCCCHHH LSDLLKEDTLWRPNPKKVISFPRSKHPVWLKITLIHYGSIPHTFFLHLSNPVVDLFELHT HHHHHHHCCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHH EINGQWRTQWSGEQVLQKNKPIYSHMSAFPITLSPNESRTIYLKIKSDNPIFSFVSFYNS HCCCCEEECCCHHHHHHCCCCHHHHCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHCC RTFIAYSKKQDIFFAGYFGAGFMMFFFSLFLAHTLRYKKFFYFFFYLATVLLLNTYSTGF CEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC IQYFEFGNSNSWKNYLFPITIHLSSIFGLLFTLEFLETKAFSSILNRITISYILILTFVL EEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFIFVLDLRNFIQLTVFLIIIPIFLAIFISIFTLFKSKKKLEVILFLLAFGVLLFGAALN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH TFTVQGFLKPIHFASYSLPLGSALEVFFLSLALVLRVSDYRKSNEQKQEIDLQLKIAQKL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH QNGLLPKKRSHALGYPLGFRYLPATDIGGDFVEIIEKEKELGLFLCDVSGHGIPAAMIAS HHCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHH MTKVSLEIWSDILNKPALAADKIRRSLLSLLSGHFLSAFFVYIQPEERILKIANAGHLPL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHCCCCCCEE LHLDRNGNITTYTSYGRAINEFVPSDIKEKSFQLPVEGTLILFTDGVIEARNVHTGELFG EEECCCCCEEEEEHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEECCCEEECCCCCHHHCC EERFYQLIQALAKKHPQVICDSVIEQIEKFQKSKRSDDDITILALSLDSSFEVSL HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]