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The map label for this gene is scpB [H]

Identifier: 183221758

GI number: 183221758

Start: 2460071

End: 2460709

Strand: Reverse

Name: scpB [H]

Synonym: LEPBI_I2388

Alternate gene names: 183221758

Gene position: 2460709-2460071 (Counterclockwise)

Preceding gene: 183221759

Following gene: 183221757

Centisome position: 68.36

GC content: 38.03

Gene sequence:

>639_bases
TTGGAAGAAAGAAACTATACAAAGGGCCTTCTTGAGGCACTTCTCTTTTTGTCTTCAGATCCAATCAAATTATCTGCTCT
TGCGAAGTCTTGTGGAATTGAAAAAACAGAAGCACGAGAACTATTGGATGAATTGATACTTGATTACCAAGAAAGAGAAG
GTGGTTTTTTACTGCGTGAAATCGCAGGCGGATACCAATTCATCACCAACCAAAAATATAGCGAAATCCTATCTCATATT
TTCAAAGATAAAAAGAGGGAAACTCTCTCTCGAGGGACCTTAGATACTCTTGCTATCATTGCTTACAAACAACCCATCAC
ATTGACCGAGTTAGACGAAATCCGTGGAGTCTCCTCTAGAGCAATGGTCGCAAGTCTCATGTCTAAAAAATTGGTGAAAG
CAGTGGGACAAAAAGAAGTGCCGGGTCGCCCCACATTGTATGGAACTACCAACGAATTTTTATTACATTTTGGTTTGAGT
AAACTCACAGACCTACCTACACCTGTTGAAGTAAAAGAACTCAAATTTGAGGATTTTTCACCTGATTCCATTATTGTCAC
TGATGAGACAGAAATGAATCCTGACTTTGATTTAGATTCTTTACCAGAAGAATTAAAAGAAGAGAAAATCAATGAGTAA

Upstream 100 bases:

>100_bases
AGCCTTCCTTGCTGTATTAGAAGTTGTTAAAATCCGGGTTTGCAAAGTGATCCAACACGCAGTTTTCGGAGAAATCAAAA
TAGTCAAGGTTTAGATCAAT

Downstream 100 bases:

>100_bases
TGCGGAAGAAGAATTAAATAAACTCCGATCTGATATCGATTCCCTCGATACTCAAATCATAGATTTGATTCAAAAACGAG
CTGGTTTTGCACAGGAAATT

Product: chromosome segregation and condensation protein ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MEERNYTKGLLEALLFLSSDPIKLSALAKSCGIEKTEARELLDELILDYQEREGGFLLREIAGGYQFITNQKYSEILSHI
FKDKKRETLSRGTLDTLAIIAYKQPITLTELDEIRGVSSRAMVASLMSKKLVKAVGQKEVPGRPTLYGTTNEFLLHFGLS
KLTDLPTPVEVKELKFEDFSPDSIIVTDETEMNPDFDLDSLPEELKEEKINE

Sequences:

>Translated_212_residues
MEERNYTKGLLEALLFLSSDPIKLSALAKSCGIEKTEARELLDELILDYQEREGGFLLREIAGGYQFITNQKYSEILSHI
FKDKKRETLSRGTLDTLAIIAYKQPITLTELDEIRGVSSRAMVASLMSKKLVKAVGQKEVPGRPTLYGTTNEFLLHFGLS
KLTDLPTPVEVKELKFEDFSPDSIIVTDETEMNPDFDLDSLPEELKEEKINE
>Mature_212_residues
MEERNYTKGLLEALLFLSSDPIKLSALAKSCGIEKTEARELLDELILDYQEREGGFLLREIAGGYQFITNQKYSEILSHI
FKDKKRETLSRGTLDTLAIIAYKQPITLTELDEIRGVSSRAMVASLMSKKLVKAVGQKEVPGRPTLYGTTNEFLLHFGLS
KLTDLPTPVEVKELKFEDFSPDSIIVTDETEMNPDFDLDSLPEELKEEKINE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 23979; Mature: 23979

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEERNYTKGLLEALLFLSSDPIKLSALAKSCGIEKTEARELLDELILDYQEREGGFLLRE
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
IAGGYQFITNQKYSEILSHIFKDKKRETLSRGTLDTLAIIAYKQPITLTELDEIRGVSSR
HHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCHHH
AMVASLMSKKLVKAVGQKEVPGRPTLYGTTNEFLLHFGLSKLTDLPTPVEVKELKFEDFS
HHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC
PDSIIVTDETEMNPDFDLDSLPEELKEEKINE
CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEERNYTKGLLEALLFLSSDPIKLSALAKSCGIEKTEARELLDELILDYQEREGGFLLRE
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
IAGGYQFITNQKYSEILSHIFKDKKRETLSRGTLDTLAIIAYKQPITLTELDEIRGVSSR
HHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCHHH
AMVASLMSKKLVKAVGQKEVPGRPTLYGTTNEFLLHFGLSKLTDLPTPVEVKELKFEDFS
HHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC
PDSIIVTDETEMNPDFDLDSLPEELKEEKINE
CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA