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The map label for this gene is ydaM [H]

Identifier: 183221186

GI number: 183221186

Start: 1877246

End: 1878439

Strand: Direct

Name: ydaM [H]

Synonym: LEPBI_I1800

Alternate gene names: 183221186

Gene position: 1877246-1878439 (Clockwise)

Preceding gene: 183221185

Following gene: 183221188

Centisome position: 52.15

GC content: 39.11

Gene sequence:

>1194_bases
ATGCGTAGGTATACCTTCAAACGATACGAATTTGTTTTGCGGAAATTATTTTTACGCCCTTATCACCCGGAGTTCATTAC
AACTAGTTTGGACGACATTGCCTCTTCACTTCAAATCTTTAGTGTGATGACGGCTGTGACATCTATCATTTCGCTTTTGT
TTGTTGATTCACTCGTTCGTACAAAAGCAGCCAGTTTTTGGATCGCCTTTTTTAGAATTTCCTCTCTTGCCATTTGTTTT
GCCGTTTATCTCTTAGCCAAACGGCGGATCAAACGTTATGAAAAATATATCTTACATATCACAAGTTTAGTTCTCATAGG
ACTTGTGACTTTGTATATTCCCATGATGGTATTTGATAATCCAAACCATGCCTATTATTTATTTGGTTCTGCCATTGTCA
TCGCGGGAGCCTCCATCTTACTTTGGTTAGAACCCATCCGAATATGTATCCTTTCCTTGCTTTATATTTCTGTTTTTATC
CCATTACATTTAAATTACTCTCGGATCCAAGGATTTGATCGGTATTTCTTTTACCAAGATGTTCTTATCGTTTCCTTTTT
ATTAGCCTTTGGAATCGTTGCCAATTTTCTTATCAACTACTGGCGTTTTGAAGAATACCGTGTGAAAGACAAACTTCATA
TAACAGTGGGTAAACTACTTCGTATCAACCAAAAGATTGAAGACTTGTCCCGAGTGGATTCCATGACGGAACTCTTTAAC
AGAAGGCATCTTCTAGAACAATTTGATTTGTACAAAAAAAGATCACACCGAGAAGGATTTGTGATCGGACTTGTCATTTT
GGATTTGGACAAATTAAAAACGATTAACGATCGTTATGGTCACAAACAAGGGGACCTTGCCATCCAAGCCTTTGCCAAAA
CCTTAAAGTCAAGGACAAGGATCACAGACATTGCGGCAAGGATTGGTGGGGATGAGTTTTGTTTGCTCGTCTCTCCCATT
GACAAGGAAGGACTTCACACCTTAACCGAATCCATTCGGGGAAAGATGGAAGAATTAAAAATCCCGATCTATAATGCTCC
GAATGAATCTCTCACTCTCACTGTCTCTATCGGAGGAACCCTTTTCCATCCAGAAGACGATCCTAGTTTTGATGAACTCT
ACCATAAAATCGACACAGCCCTCTACACATCCAAAAACGAAGGCAGAAACCGAATCACTTTACTGGAAATGTAA

Upstream 100 bases:

>100_bases
TGATGTCCTTGCCAAATCCCAACGAAAAGTGATTTTATTCTAATCCACTAAATGGTTTACAGAGAATCCACAAATTGTAT
CCTAAAGTCTGGTTTTCACC

Downstream 100 bases:

>100_bases
AAAAAAAGATCGACGGAATGTGGATTCAAAATCATACCAGTAAATGAGACTGATTCTCAGTTTATGTCCATTACGGATAA
GGTGTAAAACTTACGAGATG

Product: putative GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MRRYTFKRYEFVLRKLFLRPYHPEFITTSLDDIASSLQIFSVMTAVTSIISLLFVDSLVRTKAASFWIAFFRISSLAICF
AVYLLAKRRIKRYEKYILHITSLVLIGLVTLYIPMMVFDNPNHAYYLFGSAIVIAGASILLWLEPIRICILSLLYISVFI
PLHLNYSRIQGFDRYFFYQDVLIVSFLLAFGIVANFLINYWRFEEYRVKDKLHITVGKLLRINQKIEDLSRVDSMTELFN
RRHLLEQFDLYKKRSHREGFVIGLVILDLDKLKTINDRYGHKQGDLAIQAFAKTLKSRTRITDIAARIGGDEFCLLVSPI
DKEGLHTLTESIRGKMEELKIPIYNAPNESLTLTVSIGGTLFHPEDDPSFDELYHKIDTALYTSKNEGRNRITLLEM

Sequences:

>Translated_397_residues
MRRYTFKRYEFVLRKLFLRPYHPEFITTSLDDIASSLQIFSVMTAVTSIISLLFVDSLVRTKAASFWIAFFRISSLAICF
AVYLLAKRRIKRYEKYILHITSLVLIGLVTLYIPMMVFDNPNHAYYLFGSAIVIAGASILLWLEPIRICILSLLYISVFI
PLHLNYSRIQGFDRYFFYQDVLIVSFLLAFGIVANFLINYWRFEEYRVKDKLHITVGKLLRINQKIEDLSRVDSMTELFN
RRHLLEQFDLYKKRSHREGFVIGLVILDLDKLKTINDRYGHKQGDLAIQAFAKTLKSRTRITDIAARIGGDEFCLLVSPI
DKEGLHTLTESIRGKMEELKIPIYNAPNESLTLTVSIGGTLFHPEDDPSFDELYHKIDTALYTSKNEGRNRITLLEM
>Mature_397_residues
MRRYTFKRYEFVLRKLFLRPYHPEFITTSLDDIASSLQIFSVMTAVTSIISLLFVDSLVRTKAASFWIAFFRISSLAICF
AVYLLAKRRIKRYEKYILHITSLVLIGLVTLYIPMMVFDNPNHAYYLFGSAIVIAGASILLWLEPIRICILSLLYISVFI
PLHLNYSRIQGFDRYFFYQDVLIVSFLLAFGIVANFLINYWRFEEYRVKDKLHITVGKLLRINQKIEDLSRVDSMTELFN
RRHLLEQFDLYKKRSHREGFVIGLVILDLDKLKTINDRYGHKQGDLAIQAFAKTLKSRTRITDIAARIGGDEFCLLVSPI
DKEGLHTLTESIRGKMEELKIPIYNAPNESLTLTVSIGGTLFHPEDDPSFDELYHKIDTALYTSKNEGRNRITLLEM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=37.5, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=30.5882352941176, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI145693134, Length=195, Percent_Identity=32.8205128205128, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=34.2541436464088, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=32.7160493827161, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI87081974, Length=171, Percent_Identity=28.6549707602339, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=31.547619047619, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788085, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=30.4878048780488, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=31.1764705882353, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=30.9941520467836, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=30.3370786516854, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46174; Mature: 46174

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRYTFKRYEFVLRKLFLRPYHPEFITTSLDDIASSLQIFSVMTAVTSIISLLFVDSLVR
CCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKAASFWIAFFRISSLAICFAVYLLAKRRIKRYEKYILHITSLVLIGLVTLYIPMMVFDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
PNHAYYLFGSAIVIAGASILLWLEPIRICILSLLYISVFIPLHLNYSRIQGFDRYFFYQD
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHH
VLIVSFLLAFGIVANFLINYWRFEEYRVKDKLHITVGKLLRINQKIEDLSRVDSMTELFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RRHLLEQFDLYKKRSHREGFVIGLVILDLDKLKTINDRYGHKQGDLAIQAFAKTLKSRTR
HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ITDIAARIGGDEFCLLVSPIDKEGLHTLTESIRGKMEELKIPIYNAPNESLTLTVSIGGT
HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCHHHHCCCCEECCCCCCEEEEEEECCE
LFHPEDDPSFDELYHKIDTALYTSKNEGRNRITLLEM
EECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
>Mature Secondary Structure
MRRYTFKRYEFVLRKLFLRPYHPEFITTSLDDIASSLQIFSVMTAVTSIISLLFVDSLVR
CCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKAASFWIAFFRISSLAICFAVYLLAKRRIKRYEKYILHITSLVLIGLVTLYIPMMVFDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
PNHAYYLFGSAIVIAGASILLWLEPIRICILSLLYISVFIPLHLNYSRIQGFDRYFFYQD
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHH
VLIVSFLLAFGIVANFLINYWRFEEYRVKDKLHITVGKLLRINQKIEDLSRVDSMTELFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RRHLLEQFDLYKKRSHREGFVIGLVILDLDKLKTINDRYGHKQGDLAIQAFAKTLKSRTR
HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ITDIAARIGGDEFCLLVSPIDKEGLHTLTESIRGKMEELKIPIYNAPNESLTLTVSIGGT
HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCHHHHCCCCEECCCCCCEEEEEEECCE
LFHPEDDPSFDELYHKIDTALYTSKNEGRNRITLLEM
EECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]