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The map label for this gene is sdhB [H]

Identifier: 183221085

GI number: 183221085

Start: 1771984

End: 1772724

Strand: Direct

Name: sdhB [H]

Synonym: LEPBI_I1699

Alternate gene names: 183221085

Gene position: 1771984-1772724 (Clockwise)

Preceding gene: 183221084

Following gene: 183221090

Centisome position: 49.23

GC content: 44.26

Gene sequence:

>741_bases
ATGGATACAATGAAGTTACACCTGAAAGTTTGGAGACAAAAAGACAAAAACGACAAAGGTCGTATGGTGAGTTACGAAGC
AAACAACGTAAGCGAACATATGTCCTTTTTGGAAATGCTTGATGTTGTGAACGACGATCTCATCAAAAAAGGAGATGATC
CCATCGCTTTCGACCATGACTGTCGGGAAGGGATTTGTGGATCATGTTCTATGGTGATCAACGGTGTTCCGCATGGTCCA
GAAAAAGGAACCACCACTTGCCAATTGCATATGCGTAAGTTCAAAGATGGTGATACCGTCGTGATCGAACCTTGGCGTGC
CAAAGCATTCCCAGTCACTAAGGACCTCGTGGTAGACCGATCTGCATTTGATCGCATCATCCAAGCCGGTGGGTATGTCA
ATGTAAACACTGGTGGGGCTCCTGATGGAAATGCCCTGCCGATTCCAAAAGTAGATGCTGACCTTGCGATGGATGCGGCG
ACTTGTATTGGATGTGGGGCTTGTGTCGCTGCCTGTAAAAATGCATCAGCGATGTTATTTGTTTCGGCGAAGGTATCTCA
CTTGGCTCTTTTACCACAAGGTGTGGTAGAGAAAAAAGAAAGGGTACGTAAAATGGTAAGTGCAATGGACAAAGAAGGTT
TTGGAAATTGTACAAACCAATACGAATGTGAAGCAGCTTGTCCGAAAGAAATTTCTGTCAACTTCATCACAAAGCTCAAC
AGAGAATTCATTTCAAGCTAA

Upstream 100 bases:

>100_bases
TATCCGCTTGGGAATACCAAGGAGAAGGAAAAACTCCGGTAGAACACCGAGAAAAACTCGAATACGAAAACATCCACTTA
GCCGTAAGGAGCTACAAATA

Downstream 100 bases:

>100_bases
TCCACTTAGATTGATTTCCTTTGAGAAAAGAAAAACCCGGAATTAATACTCCGGGTTTTTTTATGTTTAAATCTTAAAAA
GTTGGTTATTCGTTTTTTGG

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MDTMKLHLKVWRQKDKNDKGRMVSYEANNVSEHMSFLEMLDVVNDDLIKKGDDPIAFDHDCREGICGSCSMVINGVPHGP
EKGTTTCQLHMRKFKDGDTVVIEPWRAKAFPVTKDLVVDRSAFDRIIQAGGYVNVNTGGAPDGNALPIPKVDADLAMDAA
TCIGCGACVAACKNASAMLFVSAKVSHLALLPQGVVEKKERVRKMVSAMDKEGFGNCTNQYECEAACPKEISVNFITKLN
REFISS

Sequences:

>Translated_246_residues
MDTMKLHLKVWRQKDKNDKGRMVSYEANNVSEHMSFLEMLDVVNDDLIKKGDDPIAFDHDCREGICGSCSMVINGVPHGP
EKGTTTCQLHMRKFKDGDTVVIEPWRAKAFPVTKDLVVDRSAFDRIIQAGGYVNVNTGGAPDGNALPIPKVDADLAMDAA
TCIGCGACVAACKNASAMLFVSAKVSHLALLPQGVVEKKERVRKMVSAMDKEGFGNCTNQYECEAACPKEISVNFITKLN
REFISS
>Mature_246_residues
MDTMKLHLKVWRQKDKNDKGRMVSYEANNVSEHMSFLEMLDVVNDDLIKKGDDPIAFDHDCREGICGSCSMVINGVPHGP
EKGTTTCQLHMRKFKDGDTVVIEPWRAKAFPVTKDLVVDRSAFDRIIQAGGYVNVNTGGAPDGNALPIPKVDADLAMDAA
TCIGCGACVAACKNASAMLFVSAKVSHLALLPQGVVEKKERVRKMVSAMDKEGFGNCTNQYECEAACPKEISVNFITKLN
REFISS

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1790596, Length=238, Percent_Identity=28.1512605042017, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 26890; Mature: 26890

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00197 2FE2S_FER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTMKLHLKVWRQKDKNDKGRMVSYEANNVSEHMSFLEMLDVVNDDLIKKGDDPIAFDHD
CCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
CREGICGSCSMVINGVPHGPEKGTTTCQLHMRKFKDGDTVVIEPWRAKAFPVTKDLVVDR
HHCCCCCCCHHEECCCCCCCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCCHHHHHHCH
SAFDRIIQAGGYVNVNTGGAPDGNALPIPKVDADLAMDAATCIGCGACVAACKNASAMLF
HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
VSAKVSHLALLPQGVVEKKERVRKMVSAMDKEGFGNCTNQYECEAACPKEISVNFITKLN
EECCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHH
REFISS
HHHHCC
>Mature Secondary Structure
MDTMKLHLKVWRQKDKNDKGRMVSYEANNVSEHMSFLEMLDVVNDDLIKKGDDPIAFDHD
CCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
CREGICGSCSMVINGVPHGPEKGTTTCQLHMRKFKDGDTVVIEPWRAKAFPVTKDLVVDR
HHCCCCCCCHHEECCCCCCCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCCHHHHHHCH
SAFDRIIQAGGYVNVNTGGAPDGNALPIPKVDADLAMDAATCIGCGACVAACKNASAMLF
HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
VSAKVSHLALLPQGVVEKKERVRKMVSAMDKEGFGNCTNQYECEAACPKEISVNFITKLN
EECCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHH
REFISS
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]