Click here to switch to the map view.

The map label for this gene is rimM [H]

Identifier: 183221049

GI number: 183221049

Start: 1736888

End: 1737403

Strand: Direct

Name: rimM [H]

Synonym: LEPBI_I1662

Alternate gene names: 183221049

Gene position: 1736888-1737403 (Clockwise)

Preceding gene: 183221048

Following gene: 183221050

Centisome position: 48.25

GC content: 44.38

Gene sequence:

>516_bases
GTGAAAGTGGGGGTCTTTGGATCCTCACATGGAATCAAAGGGTTCATCAAAGTTTTCACAGAAGGGGAAACACTGCACAC
CCTAAAAGCTCCCGCAACCTGCACTGTAGAGGACCCGCAAGGCAAAACATCCACAATTGCCATTGAAGAGTTTCGTCCCA
ATGGGAATCATTTCCTTGTCAAAATCAAAGGCTACGACACTCCTGAAACTGTAGTCAAATACCGTGGATACTCACTCCTC
TGGAAAAAGGAAGACCTTCCGAAGCCGAATGAAGGGGAGATTTATTCAGAAGACCTCATCGGGCTCCTTGTCATTTCCAA
AGAAACAAAACAACCGTTAAATTATAAGATCACCCAAGTGATGGATAACCCAGCCCATCCAATTTTGGAATGTAAACCCA
TCCAAGGGGAAGGAGAGACAATACTCGTTCCTTTCCTAAACCAATTTGTGGGTGATTGGGATTTAGAAAACCAAACCATC
GAATGCATTCATTGGGAGCAGTGGTTTGCGCTTTAA

Upstream 100 bases:

>100_bases
AACGGAAGGATTGCAAAGTCACTCCGTACGGTGTTACAAGCCGCGGGAACCAAACAAGGCAAAAACTATACTTTAGAAAT
TGTCGACTAAACCAAGTTTA

Downstream 100 bases:

>100_bases
TTTCATCACACTATTCCCCGAAAAAATCACTTCTTATTTTGATACTGGGATCCCTGGAAAAGCAGTGAAACAAGGGGTCG
TCGAAATCAATCCTGTACAC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKVGVFGSSHGIKGFIKVFTEGETLHTLKAPATCTVEDPQGKTSTIAIEEFRPNGNHFLVKIKGYDTPETVVKYRGYSLL
WKKEDLPKPNEGEIYSEDLIGLLVISKETKQPLNYKITQVMDNPAHPILECKPIQGEGETILVPFLNQFVGDWDLENQTI
ECIHWEQWFAL

Sequences:

>Translated_171_residues
MKVGVFGSSHGIKGFIKVFTEGETLHTLKAPATCTVEDPQGKTSTIAIEEFRPNGNHFLVKIKGYDTPETVVKYRGYSLL
WKKEDLPKPNEGEIYSEDLIGLLVISKETKQPLNYKITQVMDNPAHPILECKPIQGEGETILVPFLNQFVGDWDLENQTI
ECIHWEQWFAL
>Mature_171_residues
MKVGVFGSSHGIKGFIKVFTEGETLHTLKAPATCTVEDPQGKTSTIAIEEFRPNGNHFLVKIKGYDTPETVVKYRGYSLL
WKKEDLPKPNEGEIYSEDLIGLLVISKETKQPLNYKITQVMDNPAHPILECKPIQGEGETILVPFLNQFVGDWDLENQTI
ECIHWEQWFAL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19376; Mature: 19376

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVGVFGSSHGIKGFIKVFTEGETLHTLKAPATCTVEDPQGKTSTIAIEEFRPNGNHFLV
CEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEECCCCCEEEEEEEEECCCCCEEEE
KIKGYDTPETVVKYRGYSLLWKKEDLPKPNEGEIYSEDLIGLLVISKETKQPLNYKITQV
EEECCCCHHHHHEECCEEEEEECCCCCCCCCCCEECCCEEEEEEEECCCCCCCCEEEEEE
MDNPAHPILECKPIQGEGETILVPFLNQFVGDWDLENQTIECIHWEQWFAL
ECCCCCCCEEEEECCCCCCEEEEEHHHHHCCCCCCCCCEEEEEEECEEECC
>Mature Secondary Structure
MKVGVFGSSHGIKGFIKVFTEGETLHTLKAPATCTVEDPQGKTSTIAIEEFRPNGNHFLV
CEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEECCCCCEEEEEEEEECCCCCEEEE
KIKGYDTPETVVKYRGYSLLWKKEDLPKPNEGEIYSEDLIGLLVISKETKQPLNYKITQV
EEECCCCHHHHHEECCEEEEEECCCCCCCCCCCEECCCEEEEEEEECCCCCCCCEEEEEE
MDNPAHPILECKPIQGEGETILVPFLNQFVGDWDLENQTIECIHWEQWFAL
ECCCCCCCEEEEECCCCCCEEEEEHHHHHCCCCCCCCCEEEEEEECEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA