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The map label for this gene is rbn [C]

Identifier: 183220924

GI number: 183220924

Start: 1602409

End: 1604793

Strand: Reverse

Name: rbn [C]

Synonym: LEPBI_I1537

Alternate gene names: 183220924

Gene position: 1604793-1602409 (Counterclockwise)

Preceding gene: 183220925

Following gene: 183220909

Centisome position: 44.58

GC content: 39.5

Gene sequence:

>2385_bases
ATGAGTGAATCGATGAAACCCCCTCTACTTGTACGTTTGACTACCATACCAGAAGGACCTGGTTGGAAACGAAGGCTCAT
CATCGGCATTCGCGTTTTGCTCGTCTCTGTACATCGGTTTATGAAAGACGATTGCCTGATCATTGGTTCTAGTCTCGCTT
ATACTACCATTGTGACATTGATACCAACTCTTACGGTAGCACTTGCTCTCATCACGGTTGCATCAGGAATCCACACTCGA
CAGGCAGAGATGGTGGATGAAATCAATTCTTATCTCTTACGAAATAATATCCAATTTGATATCACACCTTATTTGGAAAC
ACTTTCCGATATCATATCCACTGCGACTCAAATTGGAGCTGTTGGATTTGTTGTTTTTATTTTTTCAGCAACTGCCGTCT
TGCGTTCGTTAGAGAAGGCATTTCATATCATCTGGAACATTGACCTCCACCGTAATTTTATCAATAAATTTGTATTTTAT
TTTTTTCTCATCTCCTTTGGTCCTTTACTCTTTGTGGTTGGGAAAAATATCACAGACACAATTTCTGATTCTGTGCGTTC
GCCACATTTGAAATCCATTGTGGCAACAAAACATGGAGAGATATGGGTTGCAGGAGAAAAAGGAAATATTGGAGCGATGC
GGGAACTTAACAAATCCATTTCCTTTATCCCCGAAGCCAGTATCGACTTTGAAAATATGCTCTGCATTGATACTGAATCT
GTGGAAACGGGTACTTGCAAAAAACCTAATATCAGAAAAGAGAACTTTTTTCGCATCCGTAGTGTTGGAAATGATCTTTT
TACCATCTCAGAAGAAGGAACGTTTTTATATTCCAATGATTTAGGGAACCATTGGAAGGTTCACTCTCTGAAAGGCATTA
ATGTTTCTGATTTTGGAGCCATTGACTTTGATACACTTTTCATTCTTACACAAGACACACGAACCCTTCGGTATGACTTA
GGCAAACCATTCAAAGAAATCAAACGGTTTCATGATGAAGGCATTACACCCATTCGCGTTCGATTTTTTTCTGAGAAAGA
TGGATTCATTTTGGACCGAGAAGGAAGGTTATGGAAAACAAGCGATGGAGGGACTAGTTTTTTCCCACAGGAAATTTCCC
AAAAGCCATTAAATGATATCTCATTTCTCAATCGAAGCATTGGATTTTTGGTAGGAGATAGTGGTGCGATTTTCAAAACC
ACTGATGGAGGTTATACCTGGACTGACCTAAGCCATAGAAAGTATTCTTATGAACGGGTCTGGGTATTTGTTTCACCGAA
GAAACAAGACTATGATATCTTTGTTCTCACATCATTGGGAGACATTCTACTTTCGGAAGATGAAGGTGAAAACTGGTCTG
TGGCATACAAAGGAAAAGCAGGTATGATCCTCGACATGCTCTTACTTTCCAAAAAGAAAACTTCAGTGGAAGTAGACCAA
AGCTCCAAAGACACAGTTGCGAAAGAAACCTCCTCCCTCTCTTCCATCACAGGAGAGGAGAGTATTGAAATTGAAAACCA
AAACGAAGCAGAAAGTCCCAATGAAGGGATGCTTGGCATCATTGGTGTGGGAGAATTTAATAAAATCATTCGAGTCGAAG
ACAATGGGAGTGGCCAAACCATTTGGAAAAAATACCAAGGTGGGAAACGATTTTTTTCTTTGTATTCGATCTTTCAGATT
TTGTTACCTTTGTTATCACTGTGGTTGTTCTTTTTACTCATCTTTAACATCATTCCAAATACCAAGGTACCGATCAAAGC
ATCCTCGATAGGAGCGGCAGTCACTGGACTGATCCTCATCTTATTCTTTTGGGGGTTTATCAACATCTACCTAACATCAT
TTACCGAAAAAACGATGTTAGTCTACAAAGCACTTGCTGCCATCCCTATTGCCTTACTTGCGATTTATTCTATCGCGCTC
ATCATATTGTATGGGGCGGAAGTAACAGCTACCCTTCAATTCCCAGACAGGTATCTGCTTCCAAAACATCCGTTTGATGA
CATCGATTCTACTTTGTCCTACGAGTTTTATAAAATCTTACAAGTATTAGCCCTCACCTATACCCACCAAGAGAACAAAG
GTGAACTCATCAAACTCACGCAACTTCGAAAATCACTGTTATTATCAGAAAAGGAATTATCTCAAATTTTAGATAAGTTG
ACCGATTCCAAACTCATCCAAATCACAGAAGACAAACGTCTTACTCCCATGAAACTCAAAGAACAAGTGGATTTGGTGTC
TGTTTATGAAAGTACATCAAGTTTCAAACTTGGTGCTCCGAAAGAAAGGGCAAGCCTCTCGCCAAAACTTAACGAAAGTC
TCTCTAAATTGGAAGATAAATGGAAAGAAGAACTCAAACGTACTTCTTTCTCTGAGTGGGTTTAA

Upstream 100 bases:

>100_bases
TCGGATTTCCTTTTACCATTTTCGATCCAAATGGAAACGGAAAGGATACCCCCTCACATCAAGTTACGTTTTGTACGCTT
TTAAAAAATAGGAAACTAAT

Downstream 100 bases:

>100_bases
AGGTAAGGATTTTTTTTCACGGGCGGAAGGGATTGTGACATCTGTTTGTAAATCTCTTCTGCTAGGCCCATGGATTCATT
TTGAGAGATATTTTTTGCAT

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 794; Mature: 793

Protein sequence:

>794_residues
MSESMKPPLLVRLTTIPEGPGWKRRLIIGIRVLLVSVHRFMKDDCLIIGSSLAYTTIVTLIPTLTVALALITVASGIHTR
QAEMVDEINSYLLRNNIQFDITPYLETLSDIISTATQIGAVGFVVFIFSATAVLRSLEKAFHIIWNIDLHRNFINKFVFY
FFLISFGPLLFVVGKNITDTISDSVRSPHLKSIVATKHGEIWVAGEKGNIGAMRELNKSISFIPEASIDFENMLCIDTES
VETGTCKKPNIRKENFFRIRSVGNDLFTISEEGTFLYSNDLGNHWKVHSLKGINVSDFGAIDFDTLFILTQDTRTLRYDL
GKPFKEIKRFHDEGITPIRVRFFSEKDGFILDREGRLWKTSDGGTSFFPQEISQKPLNDISFLNRSIGFLVGDSGAIFKT
TDGGYTWTDLSHRKYSYERVWVFVSPKKQDYDIFVLTSLGDILLSEDEGENWSVAYKGKAGMILDMLLLSKKKTSVEVDQ
SSKDTVAKETSSLSSITGEESIEIENQNEAESPNEGMLGIIGVGEFNKIIRVEDNGSGQTIWKKYQGGKRFFSLYSIFQI
LLPLLSLWLFFLLIFNIIPNTKVPIKASSIGAAVTGLILILFFWGFINIYLTSFTEKTMLVYKALAAIPIALLAIYSIAL
IILYGAEVTATLQFPDRYLLPKHPFDDIDSTLSYEFYKILQVLALTYTHQENKGELIKLTQLRKSLLLSEKELSQILDKL
TDSKLIQITEDKRLTPMKLKEQVDLVSVYESTSSFKLGAPKERASLSPKLNESLSKLEDKWKEELKRTSFSEWV

Sequences:

>Translated_794_residues
MSESMKPPLLVRLTTIPEGPGWKRRLIIGIRVLLVSVHRFMKDDCLIIGSSLAYTTIVTLIPTLTVALALITVASGIHTR
QAEMVDEINSYLLRNNIQFDITPYLETLSDIISTATQIGAVGFVVFIFSATAVLRSLEKAFHIIWNIDLHRNFINKFVFY
FFLISFGPLLFVVGKNITDTISDSVRSPHLKSIVATKHGEIWVAGEKGNIGAMRELNKSISFIPEASIDFENMLCIDTES
VETGTCKKPNIRKENFFRIRSVGNDLFTISEEGTFLYSNDLGNHWKVHSLKGINVSDFGAIDFDTLFILTQDTRTLRYDL
GKPFKEIKRFHDEGITPIRVRFFSEKDGFILDREGRLWKTSDGGTSFFPQEISQKPLNDISFLNRSIGFLVGDSGAIFKT
TDGGYTWTDLSHRKYSYERVWVFVSPKKQDYDIFVLTSLGDILLSEDEGENWSVAYKGKAGMILDMLLLSKKKTSVEVDQ
SSKDTVAKETSSLSSITGEESIEIENQNEAESPNEGMLGIIGVGEFNKIIRVEDNGSGQTIWKKYQGGKRFFSLYSIFQI
LLPLLSLWLFFLLIFNIIPNTKVPIKASSIGAAVTGLILILFFWGFINIYLTSFTEKTMLVYKALAAIPIALLAIYSIAL
IILYGAEVTATLQFPDRYLLPKHPFDDIDSTLSYEFYKILQVLALTYTHQENKGELIKLTQLRKSLLLSEKELSQILDKL
TDSKLIQITEDKRLTPMKLKEQVDLVSVYESTSSFKLGAPKERASLSPKLNESLSKLEDKWKEELKRTSFSEWV
>Mature_793_residues
SESMKPPLLVRLTTIPEGPGWKRRLIIGIRVLLVSVHRFMKDDCLIIGSSLAYTTIVTLIPTLTVALALITVASGIHTRQ
AEMVDEINSYLLRNNIQFDITPYLETLSDIISTATQIGAVGFVVFIFSATAVLRSLEKAFHIIWNIDLHRNFINKFVFYF
FLISFGPLLFVVGKNITDTISDSVRSPHLKSIVATKHGEIWVAGEKGNIGAMRELNKSISFIPEASIDFENMLCIDTESV
ETGTCKKPNIRKENFFRIRSVGNDLFTISEEGTFLYSNDLGNHWKVHSLKGINVSDFGAIDFDTLFILTQDTRTLRYDLG
KPFKEIKRFHDEGITPIRVRFFSEKDGFILDREGRLWKTSDGGTSFFPQEISQKPLNDISFLNRSIGFLVGDSGAIFKTT
DGGYTWTDLSHRKYSYERVWVFVSPKKQDYDIFVLTSLGDILLSEDEGENWSVAYKGKAGMILDMLLLSKKKTSVEVDQS
SKDTVAKETSSLSSITGEESIEIENQNEAESPNEGMLGIIGVGEFNKIIRVEDNGSGQTIWKKYQGGKRFFSLYSIFQIL
LPLLSLWLFFLLIFNIIPNTKVPIKASSIGAAVTGLILILFFWGFINIYLTSFTEKTMLVYKALAAIPIALLAIYSIALI
ILYGAEVTATLQFPDRYLLPKHPFDDIDSTLSYEFYKILQVLALTYTHQENKGELIKLTQLRKSLLLSEKELSQILDKLT
DSKLIQITEDKRLTPMKLKEQVDLVSVYESTSSFKLGAPKERASLSPKLNESLSKLEDKWKEELKRTSFSEWV

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 89761; Mature: 89630

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESMKPPLLVRLTTIPEGPGWKRRLIIGIRVLLVSVHRFMKDDCLIIGSSLAYTTIVTL
CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHH
IPTLTVALALITVASGIHTRQAEMVDEINSYLLRNNIQFDITPYLETLSDIISTATQIGA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
VGFVVFIFSATAVLRSLEKAFHIIWNIDLHRNFINKFVFYFFLISFGPLLFVVGKNITDT
HHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHH
ISDSVRSPHLKSIVATKHGEIWVAGEKGNIGAMRELNKSISFIPEASIDFENMLCIDTES
HHHHHCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
VETGTCKKPNIRKENFFRIRSVGNDLFTISEEGTFLYSNDLGNHWKVHSLKGINVSDFGA
CCCCCCCCCCCCHHHHEEHEECCCCEEEEECCCCEEEECCCCCCEEEEEECCCCCCCCCC
IDFDTLFILTQDTRTLRYDLGKPFKEIKRFHDEGITPIRVRFFSEKDGFILDREGRLWKT
CCEEEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCCEEEE
SDGGTSFFPQEISQKPLNDISFLNRSIGFLVGDSGAIFKTTDGGYTWTDLSHRKYSYERV
CCCCCCCCCHHHHCCCCHHHHHHHHCCCEEECCCCCEEEECCCCEEEECCCCCEECEEEE
WVFVSPKKQDYDIFVLTSLGDILLSEDEGENWSVAYKGKAGMILDMLLLSKKKTSVEVDQ
EEEECCCCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECC
SSKDTVAKETSSLSSITGEESIEIENQNEAESPNEGMLGIIGVGEFNKIIRVEDNGSGQT
CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCH
IWKKYQGGKRFFSLYSIFQILLPLLSLWLFFLLIFNIIPNTKVPIKASSIGAAVTGLILI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
LFFWGFINIYLTSFTEKTMLVYKALAAIPIALLAIYSIALIILYGAEVTATLQFPDRYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
PKHPFDDIDSTLSYEFYKILQVLALTYTHQENKGELIKLTQLRKSLLLSEKELSQILDKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCHHHHHHHHHHH
TDSKLIQITEDKRLTPMKLKEQVDLVSVYESTSSFKLGAPKERASLSPKLNESLSKLEDK
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
WKEELKRTSFSEWV
HHHHHHHCCHHCCC
>Mature Secondary Structure 
SESMKPPLLVRLTTIPEGPGWKRRLIIGIRVLLVSVHRFMKDDCLIIGSSLAYTTIVTL
CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHH
IPTLTVALALITVASGIHTRQAEMVDEINSYLLRNNIQFDITPYLETLSDIISTATQIGA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
VGFVVFIFSATAVLRSLEKAFHIIWNIDLHRNFINKFVFYFFLISFGPLLFVVGKNITDT
HHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHH
ISDSVRSPHLKSIVATKHGEIWVAGEKGNIGAMRELNKSISFIPEASIDFENMLCIDTES
HHHHHCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
VETGTCKKPNIRKENFFRIRSVGNDLFTISEEGTFLYSNDLGNHWKVHSLKGINVSDFGA
CCCCCCCCCCCCHHHHEEHEECCCCEEEEECCCCEEEECCCCCCEEEEEECCCCCCCCCC
IDFDTLFILTQDTRTLRYDLGKPFKEIKRFHDEGITPIRVRFFSEKDGFILDREGRLWKT
CCEEEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCCEEEE
SDGGTSFFPQEISQKPLNDISFLNRSIGFLVGDSGAIFKTTDGGYTWTDLSHRKYSYERV
CCCCCCCCCHHHHCCCCHHHHHHHHCCCEEECCCCCEEEECCCCEEEECCCCCEECEEEE
WVFVSPKKQDYDIFVLTSLGDILLSEDEGENWSVAYKGKAGMILDMLLLSKKKTSVEVDQ
EEEECCCCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECC
SSKDTVAKETSSLSSITGEESIEIENQNEAESPNEGMLGIIGVGEFNKIIRVEDNGSGQT
CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCH
IWKKYQGGKRFFSLYSIFQILLPLLSLWLFFLLIFNIIPNTKVPIKASSIGAAVTGLILI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
LFFWGFINIYLTSFTEKTMLVYKALAAIPIALLAIYSIALIILYGAEVTATLQFPDRYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
PKHPFDDIDSTLSYEFYKILQVLALTYTHQENKGELIKLTQLRKSLLLSEKELSQILDKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCHHHHHHHHHHH
TDSKLIQITEDKRLTPMKLKEQVDLVSVYESTSSFKLGAPKERASLSPKLNESLSKLEDK
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
WKEELKRTSFSEWV
HHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA