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The map label for this gene is ykuI [H]

Identifier: 183220660

GI number: 183220660

Start: 1313675

End: 1314946

Strand: Direct

Name: ykuI [H]

Synonym: LEPBI_I1269

Alternate gene names: 183220660

Gene position: 1313675-1314946 (Clockwise)

Preceding gene: 183220658

Following gene: 183220661

Centisome position: 36.49

GC content: 38.92

Gene sequence:

>1272_bases
ATGTATCCCTCTATGCAAATAGAAAGCGAAAGTCACAAACTAGTTCGAGAATGGAAAGAGTGGCTTTCCCATGGGGAAAT
TATCCCCGTGTTCCAACCCATTTTATCATCCGAATCCACTGGTATTTACGGGTATGAACTTCTTGGTCGTTTGTCCACAC
CACAAGGCCTACTCAGTTTAGGAGAATTTTTTTTAACTCATACCTTAGGTTATGATGAATTATTTTTTTTGAAAAAACAA
GTCGATGAGGAAATCCGATTTTCCGCCTTACAAAAGTTTGCAAAAGAAGCTCCTCCTGAAACAAAATTATTCCTGAATAT
TTCTCCGAACATTTTATACCATGCCTTGCTGAATTTAGAAACTACCTTACCACAAACCATACGGATGGTAAGAGAGGTGG
GACTTGACCCCACTCGGATCGTCATTGAAATCACAGAAGAACGATTCCCTCATAATTTAGAATTATTAAAACCGGTTTTG
AATTTATATCGAAAAGAAGGATTCTCCATTGCTGTGGATGACGCAGGCTCTGAGGCAAGTAACCTGGATCGCATCGGGTT
ATTCCATCCCGAGATCATCAAAGTGGATTTACAGATGTTACGTAGATCCACATTCTCTCGAAATTTCAAAGAGATATTAC
TCAATTTATCAAAGTTAGGTGAGTCTCTTGGGAGTAGTTTGTTATTTGAAGGTATTGAATCAGAGGATGAACTCTATAAT
GCCTTAAATTACGGAGCTCGTTACATCCAAGGGTATTATTTCGCCAAACCAGAACTACATTTTGCCAATCGATTTGAATA
CAGGTCAGAGATGCAGTCTTCCTTGGAATACTTTCATGCAAGGAAACAAAAAGAAATGAACCTTCAGATTGAATGGGAAA
CCATTTGGAAAAATAAACTATCTGAAATTGTGATGGGATTTGGACAAGAGGATGGGATTTGGGAATGGAAAGAAAACTTC
TCCACCACTGTGTTTGGTGATGGTGATTTTTTTCGGATGTACATCACAAACCATATGGGTTTCCAGGTCTCTCCCAATTA
TGCACGAACCGATTTAGGGGATATGAAACCTGATTATTCCTTTTTGGGAAAAAACTGGTCTTTTCGGCCTTATTTTTTTG
AACACCTTCATAAATCAAAAACGAGCCGGGACGCATGGACCCTCTCTCAGATGTACCATGATATTTCAGAGAGTATGATG
TTGCGTACATTTGCGAGAAACCTTTCCGAAAATTTGATATTATTTATCGATGTGGTCGTGTCTCGTAGCTGA

Upstream 100 bases:

>100_bases
AAAAATTTCCGCATTCCCGTTCTTTAATGTCTAAATAATGAGCATGATGCAGTGAACTTCACTACAATGCCCATTGGTAC
CGATCTTGCAATGAGTTTGT

Downstream 100 bases:

>100_bases
AAGTTTTTGCAGTCTGGTTCGAACCATGAATCTTGGTAAGAGATATGGCAAAAATCCAGTTTTTGCAATTACCCGTGCCA
CCCCCAAGTTATTTTGCGGC

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MYPSMQIESESHKLVREWKEWLSHGEIIPVFQPILSSESTGIYGYELLGRLSTPQGLLSLGEFFLTHTLGYDELFFLKKQ
VDEEIRFSALQKFAKEAPPETKLFLNISPNILYHALLNLETTLPQTIRMVREVGLDPTRIVIEITEERFPHNLELLKPVL
NLYRKEGFSIAVDDAGSEASNLDRIGLFHPEIIKVDLQMLRRSTFSRNFKEILLNLSKLGESLGSSLLFEGIESEDELYN
ALNYGARYIQGYYFAKPELHFANRFEYRSEMQSSLEYFHARKQKEMNLQIEWETIWKNKLSEIVMGFGQEDGIWEWKENF
STTVFGDGDFFRMYITNHMGFQVSPNYARTDLGDMKPDYSFLGKNWSFRPYFFEHLHKSKTSRDAWTLSQMYHDISESMM
LRTFARNLSENLILFIDVVVSRS

Sequences:

>Translated_423_residues
MYPSMQIESESHKLVREWKEWLSHGEIIPVFQPILSSESTGIYGYELLGRLSTPQGLLSLGEFFLTHTLGYDELFFLKKQ
VDEEIRFSALQKFAKEAPPETKLFLNISPNILYHALLNLETTLPQTIRMVREVGLDPTRIVIEITEERFPHNLELLKPVL
NLYRKEGFSIAVDDAGSEASNLDRIGLFHPEIIKVDLQMLRRSTFSRNFKEILLNLSKLGESLGSSLLFEGIESEDELYN
ALNYGARYIQGYYFAKPELHFANRFEYRSEMQSSLEYFHARKQKEMNLQIEWETIWKNKLSEIVMGFGQEDGIWEWKENF
STTVFGDGDFFRMYITNHMGFQVSPNYARTDLGDMKPDYSFLGKNWSFRPYFFEHLHKSKTSRDAWTLSQMYHDISESMM
LRTFARNLSENLILFIDVVVSRS
>Mature_423_residues
MYPSMQIESESHKLVREWKEWLSHGEIIPVFQPILSSESTGIYGYELLGRLSTPQGLLSLGEFFLTHTLGYDELFFLKKQ
VDEEIRFSALQKFAKEAPPETKLFLNISPNILYHALLNLETTLPQTIRMVREVGLDPTRIVIEITEERFPHNLELLKPVL
NLYRKEGFSIAVDDAGSEASNLDRIGLFHPEIIKVDLQMLRRSTFSRNFKEILLNLSKLGESLGSSLLFEGIESEDELYN
ALNYGARYIQGYYFAKPELHFANRFEYRSEMQSSLEYFHARKQKEMNLQIEWETIWKNKLSEIVMGFGQEDGIWEWKENF
STTVFGDGDFFRMYITNHMGFQVSPNYARTDLGDMKPDYSFLGKNWSFRPYFFEHLHKSKTSRDAWTLSQMYHDISESMM
LRTFARNLSENLILFIDVVVSRS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=23.6, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787055, Length=260, Percent_Identity=28.4615384615385, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081921, Length=243, Percent_Identity=26.7489711934156, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082096, Length=237, Percent_Identity=26.1603375527426, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=27.5303643724696, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=21.0084033613445, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633
- InterPro:   IPR018842 [H]

Pfam domain/function: PF00563 EAL; PF10388 YkuI_C [H]

EC number: NA

Molecular weight: Translated: 49524; Mature: 49524

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPSMQIESESHKLVREWKEWLSHGEIIPVFQPILSSESTGIYGYELLGRLSTPQGLLSL
CCCCCCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHH
GEFFLTHTLGYDELFFLKKQVDEEIRFSALQKFAKEAPPETKLFLNISPNILYHALLNLE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
TTLPQTIRMVREVGLDPTRIVIEITEERFPHNLELLKPVLNLYRKEGFSIAVDDAGSEAS
HHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
NLDRIGLFHPEIIKVDLQMLRRSTFSRNFKEILLNLSKLGESLGSSLLFEGIESEDELYN
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHH
ALNYGARYIQGYYFAKPELHFANRFEYRSEMQSSLEYFHARKQKEMNLQIEWETIWKNKL
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
SEIVMGFGQEDGIWEWKENFSTTVFGDGDFFRMYITNHMGFQVSPNYARTDLGDMKPDYS
HHHHHCCCCCCCCCHHHHCCCEEEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCHH
FLGKNWSFRPYFFEHLHKSKTSRDAWTLSQMYHDISESMMLRTFARNLSENLILFIDVVV
HHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
SRS
CCC
>Mature Secondary Structure
MYPSMQIESESHKLVREWKEWLSHGEIIPVFQPILSSESTGIYGYELLGRLSTPQGLLSL
CCCCCCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHH
GEFFLTHTLGYDELFFLKKQVDEEIRFSALQKFAKEAPPETKLFLNISPNILYHALLNLE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
TTLPQTIRMVREVGLDPTRIVIEITEERFPHNLELLKPVLNLYRKEGFSIAVDDAGSEAS
HHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
NLDRIGLFHPEIIKVDLQMLRRSTFSRNFKEILLNLSKLGESLGSSLLFEGIESEDELYN
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHH
ALNYGARYIQGYYFAKPELHFANRFEYRSEMQSSLEYFHARKQKEMNLQIEWETIWKNKL
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
SEIVMGFGQEDGIWEWKENFSTTVFGDGDFFRMYITNHMGFQVSPNYARTDLGDMKPDYS
HHHHHCCCCCCCCCHHHHCCCEEEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCHH
FLGKNWSFRPYFFEHLHKSKTSRDAWTLSQMYHDISESMMLRTFARNLSENLILFIDVVV
HHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
SRS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]