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The map label for this gene is yddU [C]

Identifier: 183219723

GI number: 183219723

Start: 293712

End: 295604

Strand: Reverse

Name: yddU [C]

Synonym: LEPBI_I0299

Alternate gene names: 183219723

Gene position: 295604-293712 (Counterclockwise)

Preceding gene: 183219725

Following gene: 183219722

Centisome position: 8.21

GC content: 34.5

Gene sequence:

>1893_bases
ATGATCACTGACAAACGAAACTACGTCTATTGGCTAAAATTCCGAAAGGATACAGGACCACTTCTCCGGAGATTTTTGTT
CGCTGCCTCTGGACTTTTTTTCGCGGCTGCTTGTTTGCATCTAACACCACTTTTAACCAAGTCAGGTGAGATCGATTTTA
TATTCTTTACCGTTGATTTAGGAATCTCCGTTCTATTTTTATTAGAGTATATTTTAAAAAACAAAGTCCCCCTCATCATT
CGTGTGCTCACTTTGATCGGCACTGCCATTTTTATTTCTGTATTGTCTTTTTTGAGAAGTGGTTTACTCGGAACCGGCGA
GATCTCACTTGCTTTCATCATCATAACTTTTTTTGTATTTTTACCTCCTATCCCTAGTTTAGTTTCTGCAATCCTGATTT
CAATAGTTCCAGCTATATTTGGAATTTGTGTTTACCTTTCTGTTTTATTTTTTCCCGAAGAATTAGGGATGAGAAACCAA
AGTCCAACAGAATGGTTTTTTAAATCAGTCAGTTTGTTTATATTTTCCATTCTCTCTGGATTTTTGATCCAACGTCTCAG
AGCCAAATTAATTAAAAACATTGTTTATCTGAAAGAATCAAGAGCCAAAATTTTAAAATCAAACCAACAGATCGACAAAC
TTGCGTATTTTGACTCTCTAACACAATTGCCCAATCGTTATTTATTTGAACGATCCATTCAGAATCGGATTTCATTAGGT
CAAAGTGAAGCTTATGTTTTACTGATCAACATCAAAGGGATTAAGGTTATCAATGCCTTACATGGTATTGGTTTCGGTGA
TCAAATATTAACTCTCATTGGAAATATCCTCAAACAATACACATTGGAAAGACCAGATATTATGGTAGCCAGTTTGGGTG
GAGATGAATTTATCCTCTGGATTCAAAACTCATCCAGAACAAGAATCGAAGATGCAATTGTCAAATTTGATTTGAATAAT
AACCAAACCCTCACACCTGATAGACTGGGTCACAGGTTACAATACCGCGTTTCTGGAATTCACTTTCCAACAGAAGCAAA
TGATTTGGATGAAGTCATACGTAAATTATCAATTGCAATGAATGTGGCTAGAGAAGAGTCGATTCGTCATTTAGTTTGGT
TTGAACCAGAAATGGAGAAAAAAATTGAAAGAGAACAAAAACTAAAAAACCAATTGGAGAAGGCGATCGAAAACAGTGAA
TTCAGAATTGCTTACCAAGAAAAGGTTGATATCAAAACACAAACAGTTGTTGGATTGGAAGCTCTGGCCCGATGGAATGT
ACTCGAGTTTGGTGATATATCTCCAGAAGAATTTATACCAATCATCACCAAATCGGATCTCATCGTTCCATTCGGTAAAA
ATATTTTCCAAAAAGTTGTCAGTCAAATTCCAAAACTATTGGAATCGTATGGGCATCAAATTAAAATATCCATCAATATC
TCTCCGATATTCTTTTTATACCCAAACTTTAATGAATACGTAATTGAATATTTAAAAAAACAATCTGTCGATCCAAACAT
TCTTATTTTTGAAATCACAGAGGATGTCTTCATTGATGAGATCGAAACCATTCAAAAGATTGTATCTTCTCTTCGATCCA
ATGGAATATCCGTATCCTTAGATGATTTTGGAAAAGGATATTCTTCCTTACATTATATGCAAAAAATTCAATTTGATGAG
TTAAAAATCGATAAATCATTTTTAGATGATATCGCTATCTCTGATCGAAATTTTTTACTATTGGAATCCATATGCCATTT
AGCAGACTCCCTTGGATTAAAAACAATCGCCGAAGGAATCGAAAGAGAGGAACAAATCATTCGACTGAAAAAAACATCCT
GCCATATCGTCCAAGGTTATATTTATTCAAAACCGATAATCCTTTTTGAATGA

Upstream 100 bases:

>100_bases
AGGAGAGGACACAATGAGGATAACTTAGTCTTGACGTTTTGTTTCGAAAAGACTTTTTTAAACATGCCGACATTAGACAA
ATTTTGGAAGTAAAGGGCAA

Downstream 100 bases:

>100_bases
AATTGAATAACAACTTGTTTCGCAAATTTGTTTTGATTGAAATCGAGTTGCATCATTTTCAAATTCACTCTGGAACCAAA
TCTTTTCTTTCCTAGTTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MITDKRNYVYWLKFRKDTGPLLRRFLFAASGLFFAAACLHLTPLLTKSGEIDFIFFTVDLGISVLFLLEYILKNKVPLII
RVLTLIGTAIFISVLSFLRSGLLGTGEISLAFIIITFFVFLPPIPSLVSAILISIVPAIFGICVYLSVLFFPEELGMRNQ
SPTEWFFKSVSLFIFSILSGFLIQRLRAKLIKNIVYLKESRAKILKSNQQIDKLAYFDSLTQLPNRYLFERSIQNRISLG
QSEAYVLLINIKGIKVINALHGIGFGDQILTLIGNILKQYTLERPDIMVASLGGDEFILWIQNSSRTRIEDAIVKFDLNN
NQTLTPDRLGHRLQYRVSGIHFPTEANDLDEVIRKLSIAMNVAREESIRHLVWFEPEMEKKIEREQKLKNQLEKAIENSE
FRIAYQEKVDIKTQTVVGLEALARWNVLEFGDISPEEFIPIITKSDLIVPFGKNIFQKVVSQIPKLLESYGHQIKISINI
SPIFFLYPNFNEYVIEYLKKQSVDPNILIFEITEDVFIDEIETIQKIVSSLRSNGISVSLDDFGKGYSSLHYMQKIQFDE
LKIDKSFLDDIAISDRNFLLLESICHLADSLGLKTIAEGIEREEQIIRLKKTSCHIVQGYIYSKPIILFE

Sequences:

>Translated_630_residues
MITDKRNYVYWLKFRKDTGPLLRRFLFAASGLFFAAACLHLTPLLTKSGEIDFIFFTVDLGISVLFLLEYILKNKVPLII
RVLTLIGTAIFISVLSFLRSGLLGTGEISLAFIIITFFVFLPPIPSLVSAILISIVPAIFGICVYLSVLFFPEELGMRNQ
SPTEWFFKSVSLFIFSILSGFLIQRLRAKLIKNIVYLKESRAKILKSNQQIDKLAYFDSLTQLPNRYLFERSIQNRISLG
QSEAYVLLINIKGIKVINALHGIGFGDQILTLIGNILKQYTLERPDIMVASLGGDEFILWIQNSSRTRIEDAIVKFDLNN
NQTLTPDRLGHRLQYRVSGIHFPTEANDLDEVIRKLSIAMNVAREESIRHLVWFEPEMEKKIEREQKLKNQLEKAIENSE
FRIAYQEKVDIKTQTVVGLEALARWNVLEFGDISPEEFIPIITKSDLIVPFGKNIFQKVVSQIPKLLESYGHQIKISINI
SPIFFLYPNFNEYVIEYLKKQSVDPNILIFEITEDVFIDEIETIQKIVSSLRSNGISVSLDDFGKGYSSLHYMQKIQFDE
LKIDKSFLDDIAISDRNFLLLESICHLADSLGLKTIAEGIEREEQIIRLKKTSCHIVQGYIYSKPIILFE
>Mature_630_residues
MITDKRNYVYWLKFRKDTGPLLRRFLFAASGLFFAAACLHLTPLLTKSGEIDFIFFTVDLGISVLFLLEYILKNKVPLII
RVLTLIGTAIFISVLSFLRSGLLGTGEISLAFIIITFFVFLPPIPSLVSAILISIVPAIFGICVYLSVLFFPEELGMRNQ
SPTEWFFKSVSLFIFSILSGFLIQRLRAKLIKNIVYLKESRAKILKSNQQIDKLAYFDSLTQLPNRYLFERSIQNRISLG
QSEAYVLLINIKGIKVINALHGIGFGDQILTLIGNILKQYTLERPDIMVASLGGDEFILWIQNSSRTRIEDAIVKFDLNN
NQTLTPDRLGHRLQYRVSGIHFPTEANDLDEVIRKLSIAMNVAREESIRHLVWFEPEMEKKIEREQKLKNQLEKAIENSE
FRIAYQEKVDIKTQTVVGLEALARWNVLEFGDISPEEFIPIITKSDLIVPFGKNIFQKVVSQIPKLLESYGHQIKISINI
SPIFFLYPNFNEYVIEYLKKQSVDPNILIFEITEDVFIDEIETIQKIVSSLRSNGISVSLDDFGKGYSSLHYMQKIQFDE
LKIDKSFLDDIAISDRNFLLLESICHLADSLGLKTIAEGIEREEQIIRLKKTSCHIVQGYIYSKPIILFE

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=29.7423887587822, Blast_Score=171, Evalue=2e-43,
Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=29.4252873563218, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=34.8739495798319, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=35.3909465020576, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=32.3404255319149, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=31.5126050420168, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1787055, Length=450, Percent_Identity=25.5555555555556, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1786507, Length=232, Percent_Identity=31.8965517241379, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI226510982, Length=279, Percent_Identity=29.7491039426523, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87081980, Length=266, Percent_Identity=30.4511278195489, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=24.9417249417249, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=22.6415094339623, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=26, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 72212; Mature: 72212

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDKRNYVYWLKFRKDTGPLLRRFLFAASGLFFAAACLHLTPLLTKSGEIDFIFFTVDL
CCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHH
GISVLFLLEYILKNKVPLIIRVLTLIGTAIFISVLSFLRSGLLGTGEISLAFIIITFFVF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LPPIPSLVSAILISIVPAIFGICVYLSVLFFPEELGMRNQSPTEWFFKSVSLFIFSILSG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FLIQRLRAKLIKNIVYLKESRAKILKSNQQIDKLAYFDSLTQLPNRYLFERSIQNRISLG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
QSEAYVLLINIKGIKVINALHGIGFGDQILTLIGNILKQYTLERPDIMVASLGGDEFILW
CCCEEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEE
IQNSSRTRIEDAIVKFDLNNNQTLTPDRLGHRLQYRVSGIHFPTEANDLDEVIRKLSIAM
EECCCCCCHHHEEEEEECCCCCEECHHHHCCEEEEEEECEECCCCCCHHHHHHHHHHHHH
NVAREESIRHLVWFEPEMEKKIEREQKLKNQLEKAIENSEFRIAYQEKVDIKTQTVVGLE
HHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
ALARWNVLEFGDISPEEFIPIITKSDLIVPFGKNIFQKVVSQIPKLLESYGHQIKISINI
HHHHCCCEECCCCCHHHCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
SPIFFLYPNFNEYVIEYLKKQSVDPNILIFEITEDVFIDEIETIQKIVSSLRSNGISVSL
EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEH
DDFGKGYSSLHYMQKIQFDELKIDKSFLDDIAISDRNFLLLESICHLADSLGLKTIAEGI
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHH
EREEQIIRLKKTSCHIVQGYIYSKPIILFE
HHHHHHHHHHHCCCEEEEEEEECCCEEEEC
>Mature Secondary Structure
MITDKRNYVYWLKFRKDTGPLLRRFLFAASGLFFAAACLHLTPLLTKSGEIDFIFFTVDL
CCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHH
GISVLFLLEYILKNKVPLIIRVLTLIGTAIFISVLSFLRSGLLGTGEISLAFIIITFFVF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LPPIPSLVSAILISIVPAIFGICVYLSVLFFPEELGMRNQSPTEWFFKSVSLFIFSILSG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FLIQRLRAKLIKNIVYLKESRAKILKSNQQIDKLAYFDSLTQLPNRYLFERSIQNRISLG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
QSEAYVLLINIKGIKVINALHGIGFGDQILTLIGNILKQYTLERPDIMVASLGGDEFILW
CCCEEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEE
IQNSSRTRIEDAIVKFDLNNNQTLTPDRLGHRLQYRVSGIHFPTEANDLDEVIRKLSIAM
EECCCCCCHHHEEEEEECCCCCEECHHHHCCEEEEEEECEECCCCCCHHHHHHHHHHHHH
NVAREESIRHLVWFEPEMEKKIEREQKLKNQLEKAIENSEFRIAYQEKVDIKTQTVVGLE
HHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
ALARWNVLEFGDISPEEFIPIITKSDLIVPFGKNIFQKVVSQIPKLLESYGHQIKISINI
HHHHCCCEECCCCCHHHCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
SPIFFLYPNFNEYVIEYLKKQSVDPNILIFEITEDVFIDEIETIQKIVSSLRSNGISVSL
EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEH
DDFGKGYSSLHYMQKIQFDELKIDKSFLDDIAISDRNFLLLESICHLADSLGLKTIAEGI
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHH
EREEQIIRLKKTSCHIVQGYIYSKPIILFE
HHHHHHHHHHHCCCEEEEEEEECCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]