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The map label for this gene is ycdC [C]

Identifier: 183219719

GI number: 183219719

Start: 290639

End: 291217

Strand: Reverse

Name: ycdC [C]

Synonym: LEPBI_I0295

Alternate gene names: 183219719

Gene position: 291217-290639 (Counterclockwise)

Preceding gene: 183219722

Following gene: 183219717

Centisome position: 8.09

GC content: 37.48

Gene sequence:

>579_bases
GTGCGGGCGGCAGAAGATGTTTTTGCAGAATTTGGATTCAGTGGGGCCACAACGGCAGAACTGGCAAAAGAAGCTGGCGT
CACGGAACGTACTCTTTTTAAATACTTTCCTACCAAACATGATCTATACAAACGAGTGTTATCAGGTCTATTACTGCAAA
CCATTTTACCTGGTCACATGTCAGACTTAAAAGAAAGAATCCAAAATTTGGACCCAAATTTTAAAGAATGGTATACTTCG
ATATTGAAGGCACGCTATGAAGCTGTTGCAAAAGATCCAAAAAAACTAAAACTCCTACTCGGCGCCCTTCTATTTTCAAA
GGAATTTGCAGAGATTTTTGGGCAAATGTGGAAAGTTAATTTGTATGATACCTCGATGGAAGCATTTCGTTACTTTCAGA
AAAAAGGTGAGATTCGAAACGACTTAGATCCCAATCAAATCGTGAGGGCCTCATTTAGTTTGGGGGCAAGTTTTTTAATT
ACTAAATTTATATTAGCTCCCAAATTTCCAATCGATGTTGATTTGGAAATTCAATCCATAATCAGTATCTTTTACCAAGG
GATTTCGAATCAAAAATAA

Upstream 100 bases:

>100_bases
CAAATAGACTAAAAAAATTCTGATGAAACTTACCTTAAAACTCTTACAAAATGAATTCGAAGCCTACCTAAATCCTCAAA
CTGAGAAGGAAAAGGACATC

Downstream 100 bases:

>100_bases
TTGTTCGGATGAAATTTGATCATCTCCATTTTAAATAGAAGGTTTATTTTTTTTGGGAACGAGTAATACCACCTTTCCTT
TGGTGAACAGTTGGTTTGCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator Tetr Family; Transcription Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MRAAEDVFAEFGFSGATTAELAKEAGVTERTLFKYFPTKHDLYKRVLSGLLLQTILPGHMSDLKERIQNLDPNFKEWYTS
ILKARYEAVAKDPKKLKLLLGALLFSKEFAEIFGQMWKVNLYDTSMEAFRYFQKKGEIRNDLDPNQIVRASFSLGASFLI
TKFILAPKFPIDVDLEIQSIISIFYQGISNQK

Sequences:

>Translated_192_residues
MRAAEDVFAEFGFSGATTAELAKEAGVTERTLFKYFPTKHDLYKRVLSGLLLQTILPGHMSDLKERIQNLDPNFKEWYTS
ILKARYEAVAKDPKKLKLLLGALLFSKEFAEIFGQMWKVNLYDTSMEAFRYFQKKGEIRNDLDPNQIVRASFSLGASFLI
TKFILAPKFPIDVDLEIQSIISIFYQGISNQK
>Mature_192_residues
MRAAEDVFAEFGFSGATTAELAKEAGVTERTLFKYFPTKHDLYKRVLSGLLLQTILPGHMSDLKERIQNLDPNFKEWYTS
ILKARYEAVAKDPKKLKLLLGALLFSKEFAEIFGQMWKVNLYDTSMEAFRYFQKKGEIRNDLDPNQIVRASFSLGASFLI
TKFILAPKFPIDVDLEIQSIISIFYQGISNQK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22006; Mature: 22006

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAEDVFAEFGFSGATTAELAKEAGVTERTLFKYFPTKHDLYKRVLSGLLLQTILPGHM
CCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
SDLKERIQNLDPNFKEWYTSILKARYEAVAKDPKKLKLLLGALLFSKEFAEIFGQMWKVN
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYDTSMEAFRYFQKKGEIRNDLDPNQIVRASFSLGASFLITKFILAPKFPIDVDLEIQSI
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ISIFYQGISNQK
HHHHHHHHCCCC
>Mature Secondary Structure
MRAAEDVFAEFGFSGATTAELAKEAGVTERTLFKYFPTKHDLYKRVLSGLLLQTILPGHM
CCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
SDLKERIQNLDPNFKEWYTSILKARYEAVAKDPKKLKLLLGALLFSKEFAEIFGQMWKVN
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYDTSMEAFRYFQKKGEIRNDLDPNQIVRASFSLGASFLITKFILAPKFPIDVDLEIQSI
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ISIFYQGISNQK
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA