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The map label for this gene is jag [H]

Identifier: 183219715

GI number: 183219715

Start: 285777

End: 286508

Strand: Reverse

Name: jag [H]

Synonym: LEPBI_I0291

Alternate gene names: 183219715

Gene position: 286508-285777 (Counterclockwise)

Preceding gene: 183219716

Following gene: 183219714

Centisome position: 7.96

GC content: 40.3

Gene sequence:

>732_bases
ATGAATAATTACATTTTCGAAGCCGAAGGAAAAACGAAAGGGGAAGCAGAGGATTATACTCTCGAAACCCTTCGACTCCA
ATCCGGCGACTTACGTTTCGAAGTAGTTGATTCCGGAAAGTCCGGCTTTTTAGGGATCACTCAAAAAAAACCTGCCGTTG
TACGCGCGTTTGTTGCAAACACCGATATCCCATCAGAAAAAATCATACATGGGGTGATCATCACCATTTTGAAAAAAATG
GGAATCCCTGCAGAAGTTGTTGGTATGGGTGACGTAGACGGAAAAATTTATGTGGAACTAACCAGTAAAGAATCTGGTCT
CATCATTGGAAAACGTGGAGGCACTTTGGATTCACTCCAATTCCTTCTCAATTTGATGGTAGATCCAAAAATTCGTCACA
ACCGCAAAATTGTTTTAGACATTGAATCTTATCGCGACAAACGCGAGTTATCTCTCATTCGATTAGCAAAATCAGTTGCT
GCCTCTGTCATCAAATCGGGAAGGTCAAAACTACTCGATCCAATGAATCCTTTTGAAAGAAGAATTGTCCACATGGCAAT
CCAAGAAGATGAAAGAGTGTTTACAAGATCAGAAGGAAACGGAACTTTCAAACGTGTTCGCGTGATTTCTGCCAAAGAAA
AACACAAATACAAAGATTTGGAAGATCCATCTAAAAAAGGTTTACCTGTTGAAGATTTTGCCGATGGAGTCGACCAAGAA
GATCTTGATTGA

Upstream 100 bases:

>100_bases
CCAACTCCTGCCAATAACGCACAAGCAATGGCAAGACCTGGTTTTAGAAACCAAAACAAAAAGAAAAAATGAAATCATTG
TTTAACAAGGAAGATCACAG

Downstream 100 bases:

>100_bases
TACCATAGCGGCATTGTCCACTGCCCAAGGCCCCGGAGCGATTGGTATCCTTCGGGTCTCGGGTTCCTTGGTGATGCCTA
TCGCCCTTGCTGTTCTAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNNYIFEAEGKTKGEAEDYTLETLRLQSGDLRFEVVDSGKSGFLGITQKKPAVVRAFVANTDIPSEKIIHGVIITILKKM
GIPAEVVGMGDVDGKIYVELTSKESGLIIGKRGGTLDSLQFLLNLMVDPKIRHNRKIVLDIESYRDKRELSLIRLAKSVA
ASVIKSGRSKLLDPMNPFERRIVHMAIQEDERVFTRSEGNGTFKRVRVISAKEKHKYKDLEDPSKKGLPVEDFADGVDQE
DLD

Sequences:

>Translated_243_residues
MNNYIFEAEGKTKGEAEDYTLETLRLQSGDLRFEVVDSGKSGFLGITQKKPAVVRAFVANTDIPSEKIIHGVIITILKKM
GIPAEVVGMGDVDGKIYVELTSKESGLIIGKRGGTLDSLQFLLNLMVDPKIRHNRKIVLDIESYRDKRELSLIRLAKSVA
ASVIKSGRSKLLDPMNPFERRIVHMAIQEDERVFTRSEGNGTFKRVRVISAKEKHKYKDLEDPSKKGLPVEDFADGVDQE
DLD
>Mature_243_residues
MNNYIFEAEGKTKGEAEDYTLETLRLQSGDLRFEVVDSGKSGFLGITQKKPAVVRAFVANTDIPSEKIIHGVIITILKKM
GIPAEVVGMGDVDGKIYVELTSKESGLIIGKRGGTLDSLQFLLNLMVDPKIRHNRKIVLDIESYRDKRELSLIRLAKSVA
ASVIKSGRSKLLDPMNPFERRIVHMAIQEDERVFTRSEGNGTFKRVRVISAKEKHKYKDLEDPSKKGLPVEDFADGVDQE
DLD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 27189; Mature: 27189

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNYIFEAEGKTKGEAEDYTLETLRLQSGDLRFEVVDSGKSGFLGITQKKPAVVRAFVAN
CCCCEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEECCCCCHHEEEEECC
TDIPSEKIIHGVIITILKKMGIPAEVVGMGDVDGKIYVELTSKESGLIIGKRGGTLDSLQ
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEECCCCCHHHHH
FLLNLMVDPKIRHNRKIVLDIESYRDKRELSLIRLAKSVAASVIKSGRSKLLDPMNPFER
HHHHHHCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
RIVHMAIQEDERVFTRSEGNGTFKRVRVISAKEKHKYKDLEDPSKKGLPVEDFADGVDQE
HHHHHHHHCCCCEEEECCCCCCEEEEEEECCHHHHCCCCCCCCCCCCCCHHHHHCCCCCC
DLD
CCC
>Mature Secondary Structure
MNNYIFEAEGKTKGEAEDYTLETLRLQSGDLRFEVVDSGKSGFLGITQKKPAVVRAFVAN
CCCCEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEECCCCCHHEEEEECC
TDIPSEKIIHGVIITILKKMGIPAEVVGMGDVDGKIYVELTSKESGLIIGKRGGTLDSLQ
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEECCCCCHHHHH
FLLNLMVDPKIRHNRKIVLDIESYRDKRELSLIRLAKSVAASVIKSGRSKLLDPMNPFER
HHHHHHCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
RIVHMAIQEDERVFTRSEGNGTFKRVRVISAKEKHKYKDLEDPSKKGLPVEDFADGVDQE
HHHHHHHHCCCCEEEECCCCCCEEEEEEECCHHHHCCCCCCCCCCCCCCHHHHHCCCCCC
DLD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]