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The map label for this gene is choB

Identifier: 183219710

GI number: 183219710

Start: 279645

End: 281393

Strand: Direct

Name: choB

Synonym: LEPBI_I0286

Alternate gene names: NA

Gene position: 279645-281393 (Clockwise)

Preceding gene: 183219708

Following gene: 183219711

Centisome position: 7.77

GC content: 40.42

Gene sequence:

>1749_bases
ATGAACCAAACCATTCCAAAAGAACAAAAATTTGATTACGACGTGATCATCGTTGGGTCAGGATTTGGTGGTTCTGTTTC
TGCGTATCGTCTTTCGCAAAAAGGGTACAAAGTATTAGTCATAGAATCCGGAAAAAGATGGAAGGCAGGTGACTTTCCTA
AAACCAATTGGAGTCTACGAAAGTATTTGTGGATGCCCAAATTAGGTTTTTATGGAATCCAACGAATCAATTTACTGAAT
GATTTTTTACTTGTGAGCGGATCAGGTGTTGGTGGTGGCTCACTCGTATATGCCTGTACTTTATATGTGCCTTCATCCAA
AGTTTTAAATTCACCATTGTATTCCAAGATGGGTGGAGAGAAAGCTTTGTTACCTTATTATGTTGTAGCAAAGCATATGT
TAGGTGTTACGGAAAATCCACAATTGTGGGAACCAGATCATTTATTACTTGAAACGGCAAAATCATTTGGAAAAGAAGAT
ACATTCCGAAGGACACCAGTTGGAATTTATTTCGGAAACAAAAAAGATCTTAAAGATCCTTTTTTTGAAGGAGATGGCCC
TGACCGTGATCCTTGTAATTATTGTGGTGGTTGTATGGTGGGGTGCCGACACAATGCAAAAAATACATTGGATAAAAACT
ATTTGTACTTAGCAGAAAAGTTAGGTGCTGTCATATTACCTGAAACAAAGGTAACTTCACTCATCCCTCTCAATGAAAAA
GGAATCCCAGATCCTGAAGCAAGTGGCGAATTTGGATATGAGCTGGAAACCAAGAGTACAACTGGTTGGTTTGGGTATCC
TAAAAGTAAATTTCGTTCGAATCAAGTGGTTCTATCTGCTGGAGTCATGGGAACTGTTGGCTTACTCCTCAAGATGCAAC
AAGAAAACAAAATGATCCGATTGTCAGAGAAGTTAGGTGATACGGTTCGTACGAATAGTGAGACTGTTTTGCCAGTCACA
GTACCAGCAAGTCACAATGCTGACTATTCCAGAGGGATTGCTATCACATCCTCAGTCCATCCTGATGAAAATACTCACAT
TGAACCTGTACGTTATTCCAAAGGTTCTGATTTTTTTGGAGTCCTTGCCAGTGTGATGACAGACGGTGGTGGAAAGTTTC
CAAGGCCATTGAAATTTTTTTGGACCATGGTGCGCCACCCACTTTATTTTTTAAAGGCCCACAATCCGTTTGGTTTTGCA
AAAAACTCGATCATCTTACTTGTCATGCAAACGGTAGACAATAGTGTGCGACTGGTTCGAAAGAGGCGCTTCATTTGGCC
CTTCCAAAGAACGATCACTTCAGCCCTGTCCACAGGAGAGCCAACACCAACATACATTCCGATCGCCAATGCGTTTACTC
GAAAATTAGCAGAAATTGTTGGTGGAATCCCACGTAGTTCTCTTAACGAAACTTTACTATCGGCACCTGTGACAGGTCAC
ATCATGGGTGGTTGTATTGTTGCCGAGTCACCAGAGAAAGGTGTGATTGATTTGGAAAACAAAGTATTTGGATACGAGAA
TTTACGAGTTTGTGATGCTTCGATGTTAACAGTCAACTTGGGTGTGAATCCAAGTCTTACCATCACTGCTTTATCGGAAC
GTGCGATGAGCCTTATCCCACCAAAAGAAACAACACAGATTCAATTTTTGAAGTTTGAAGTGAAACGTGGATTTGACAAA
ACAATTGCCTTCAAACCCACTAAACGTGTTGTTAAAAAATCGACAACGACAAGGAAACAATTATCGTAA

Upstream 100 bases:

>100_bases
CCAGAAGTTTTTTTCAAATTCAAAAGAGCGAATTGACAGAAAATGAATTCATAGAGAGAATCGGATTCGCTCATTCTCCA
CAAACAAGGAAAAACGAACC

Downstream 100 bases:

>100_bases
CAAGAATGAGTTTGATTGAGGTCGCGAAATCGGGGAGTATCGATGAGTGGGATTTGTGTTTAAAAGAAGGAGAAGATCCC
AATGGATTGGATACGTATGG

Product: cholesterol oxidase

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; Glucose-Methanol-Choline Oxidoreductase; GMC Oxidoreductase; Oxidoreductase; Choline Dehydrogenase; Cholesterol Oxidase ChoD; Choline Dehydrogenase-Like Flavoprotein; Oxidase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Gmc Oxidoreductase Family Protein; Ferredoxin Domain Gmc Oxidoreductase; Cholesterol Oxidase ChoD; Cholesterol-O2 Oxidoreductase; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; GMC Oxidoreductase Family Protein; Cholesterol Oxidase Chod; GMC Oxidoreductase Family

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MNQTIPKEQKFDYDVIIVGSGFGGSVSAYRLSQKGYKVLVIESGKRWKAGDFPKTNWSLRKYLWMPKLGFYGIQRINLLN
DFLLVSGSGVGGGSLVYACTLYVPSSKVLNSPLYSKMGGEKALLPYYVVAKHMLGVTENPQLWEPDHLLLETAKSFGKED
TFRRTPVGIYFGNKKDLKDPFFEGDGPDRDPCNYCGGCMVGCRHNAKNTLDKNYLYLAEKLGAVILPETKVTSLIPLNEK
GIPDPEASGEFGYELETKSTTGWFGYPKSKFRSNQVVLSAGVMGTVGLLLKMQQENKMIRLSEKLGDTVRTNSETVLPVT
VPASHNADYSRGIAITSSVHPDENTHIEPVRYSKGSDFFGVLASVMTDGGGKFPRPLKFFWTMVRHPLYFLKAHNPFGFA
KNSIILLVMQTVDNSVRLVRKRRFIWPFQRTITSALSTGEPTPTYIPIANAFTRKLAEIVGGIPRSSLNETLLSAPVTGH
IMGGCIVAESPEKGVIDLENKVFGYENLRVCDASMLTVNLGVNPSLTITALSERAMSLIPPKETTQIQFLKFEVKRGFDK
TIAFKPTKRVVKKSTTTRKQLS

Sequences:

>Translated_582_residues
MNQTIPKEQKFDYDVIIVGSGFGGSVSAYRLSQKGYKVLVIESGKRWKAGDFPKTNWSLRKYLWMPKLGFYGIQRINLLN
DFLLVSGSGVGGGSLVYACTLYVPSSKVLNSPLYSKMGGEKALLPYYVVAKHMLGVTENPQLWEPDHLLLETAKSFGKED
TFRRTPVGIYFGNKKDLKDPFFEGDGPDRDPCNYCGGCMVGCRHNAKNTLDKNYLYLAEKLGAVILPETKVTSLIPLNEK
GIPDPEASGEFGYELETKSTTGWFGYPKSKFRSNQVVLSAGVMGTVGLLLKMQQENKMIRLSEKLGDTVRTNSETVLPVT
VPASHNADYSRGIAITSSVHPDENTHIEPVRYSKGSDFFGVLASVMTDGGGKFPRPLKFFWTMVRHPLYFLKAHNPFGFA
KNSIILLVMQTVDNSVRLVRKRRFIWPFQRTITSALSTGEPTPTYIPIANAFTRKLAEIVGGIPRSSLNETLLSAPVTGH
IMGGCIVAESPEKGVIDLENKVFGYENLRVCDASMLTVNLGVNPSLTITALSERAMSLIPPKETTQIQFLKFEVKRGFDK
TIAFKPTKRVVKKSTTTRKQLS
>Mature_582_residues
MNQTIPKEQKFDYDVIIVGSGFGGSVSAYRLSQKGYKVLVIESGKRWKAGDFPKTNWSLRKYLWMPKLGFYGIQRINLLN
DFLLVSGSGVGGGSLVYACTLYVPSSKVLNSPLYSKMGGEKALLPYYVVAKHMLGVTENPQLWEPDHLLLETAKSFGKED
TFRRTPVGIYFGNKKDLKDPFFEGDGPDRDPCNYCGGCMVGCRHNAKNTLDKNYLYLAEKLGAVILPETKVTSLIPLNEK
GIPDPEASGEFGYELETKSTTGWFGYPKSKFRSNQVVLSAGVMGTVGLLLKMQQENKMIRLSEKLGDTVRTNSETVLPVT
VPASHNADYSRGIAITSSVHPDENTHIEPVRYSKGSDFFGVLASVMTDGGGKFPRPLKFFWTMVRHPLYFLKAHNPFGFA
KNSIILLVMQTVDNSVRLVRKRRFIWPFQRTITSALSTGEPTPTYIPIANAFTRKLAEIVGGIPRSSLNETLLSAPVTGH
IMGGCIVAESPEKGVIDLENKVFGYENLRVCDASMLTVNLGVNPSLTITALSERAMSLIPPKETTQIQFLKFEVKRGFDK
TIAFKPTKRVVKKSTTTRKQLS

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64553; Mature: 64553

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTIPKEQKFDYDVIIVGSGFGGSVSAYRLSQKGYKVLVIESGKRWKAGDFPKTNWSLR
CCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHH
KYLWMPKLGFYGIQRINLLNDFLLVSGSGVGGGSLVYACTLYVPSSKVLNSPLYSKMGGE
HEECCCCCCHHHHHHHHHHCEEEEEECCCCCCCCEEEEEEEECCCHHHHCCCHHHHCCCC
KALLPYYVVAKHMLGVTENPQLWEPDHLLLETAKSFGKEDTFRRTPVGIYFGNKKDLKDP
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
FFEGDGPDRDPCNYCGGCMVGCRHNAKNTLDKNYLYLAEKLGAVILPETKVTSLIPLNEK
CCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCEEEECCCCCEEEEECCCC
GIPDPEASGEFGYELETKSTTGWFGYPKSKFRSNQVVLSAGVMGTVGLLLKMQQENKMIR
CCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCEEEEECCHHHHHHHHEEECCCCCEEE
LSEKLGDTVRTNSETVLPVTVPASHNADYSRGIAITSSVHPDENTHIEPVRYSKGSDFFG
EHHHCCCHHCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCHHHH
VLASVMTDGGGKFPRPLKFFWTMVRHPLYFLKAHNPFGFAKNSIILLVMQTVDNSVRLVR
HHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECCCHHHHHHH
KRRFIWPFQRTITSALSTGEPTPTYIPIANAFTRKLAEIVGGIPRSSLNETLLSAPVTGH
HHHCCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCE
IMGGCIVAESPEKGVIDLENKVFGYENLRVCDASMLTVNLGVNPSLTITALSERAMSLIP
EECCEEEECCCCCCEEECCCCEECCCCEEEECCEEEEEEECCCCCEEEEEECHHHHHCCC
PKETTQIQFLKFEVKRGFDKTIAFKPTKRVVKKSTTTRKQLS
CCCCCEEEEEEEEECCCCCCEEEECCHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MNQTIPKEQKFDYDVIIVGSGFGGSVSAYRLSQKGYKVLVIESGKRWKAGDFPKTNWSLR
CCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHH
KYLWMPKLGFYGIQRINLLNDFLLVSGSGVGGGSLVYACTLYVPSSKVLNSPLYSKMGGE
HEECCCCCCHHHHHHHHHHCEEEEEECCCCCCCCEEEEEEEECCCHHHHCCCHHHHCCCC
KALLPYYVVAKHMLGVTENPQLWEPDHLLLETAKSFGKEDTFRRTPVGIYFGNKKDLKDP
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
FFEGDGPDRDPCNYCGGCMVGCRHNAKNTLDKNYLYLAEKLGAVILPETKVTSLIPLNEK
CCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCEEEECCCCCEEEEECCCC
GIPDPEASGEFGYELETKSTTGWFGYPKSKFRSNQVVLSAGVMGTVGLLLKMQQENKMIR
CCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCEEEEECCHHHHHHHHEEECCCCCEEE
LSEKLGDTVRTNSETVLPVTVPASHNADYSRGIAITSSVHPDENTHIEPVRYSKGSDFFG
EHHHCCCHHCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCHHHH
VLASVMTDGGGKFPRPLKFFWTMVRHPLYFLKAHNPFGFAKNSIILLVMQTVDNSVRLVR
HHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECCCHHHHHHH
KRRFIWPFQRTITSALSTGEPTPTYIPIANAFTRKLAEIVGGIPRSSLNETLLSAPVTGH
HHHCCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCE
IMGGCIVAESPEKGVIDLENKVFGYENLRVCDASMLTVNLGVNPSLTITALSERAMSLIP
EECCEEEECCCCCCEEECCCCEECCCCEEEECCEEEEEEECCCCCEEEEEECHHHHHCCC
PKETTQIQFLKFEVKRGFDKTIAFKPTKRVVKKSTTTRKQLS
CCCCCEEEEEEEEECCCCCCEEEECCHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA