| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is ybbP [H]
Identifier: 183219691
GI number: 183219691
Start: 259440
End: 261986
Strand: Direct
Name: ybbP [H]
Synonym: LEPBI_I0266
Alternate gene names: 183219691
Gene position: 259440-261986 (Clockwise)
Preceding gene: 183219690
Following gene: 183219693
Centisome position: 7.21
GC content: 42.32
Gene sequence:
>2547_bases ATGAAGGCGTCCCTCTTTCGATTTTACTTAAAACGGGAGTTGTTTTCTCGGTTTCGGTATTCTTTACTCATTGTCGTTTC CATCACACTCGGCGTGGGATCTGTGATTGGGATCCATTCCTATAAGGACAATACAGCAAATGCCATTAAAAAAGAGGCAA AATCGATTATGGGAGCGGATTTGGCCTTACAATCCCCCCAAGAAATCACCGATTCTGCGAAGGAATTGATCAAAACTCAT CTTCCAGAAGGTGCAAAAACCAGTCGTTCCATCCAATTTTTATCCATGATTTCCAATGATTCGGGTACAGAAAATTCCCT CAGCTTTATCAAAGGGATCGAAACAAGTTACCCATTTTATGGGGAAATGAAAACAGAACCTGAGTCTGCCTACCGTAACT TAAAACCAAATCAAGTTTTACTCGATGCTTCGCTCGTGGAAAATCTAAAGTTAAAAATCGGAGACCGAGTTCGGTTAGGT GATAGTTTGCTTGTGCTCGCAGGAATTGTTATAAAAGAACCTGGTGCGGTAGGTTCTTTTGTAGGTTCGGCTCCTGGCTC CATCATCCTAAAGGATACGGCCATCCAAACAGGACTTGTGCAACGGGGTAGTCGCATTCGTTATACGGTGTATCTAAAAT TCCCTGAATCCATAGACAGTATGGAATGGAAGGACAAAGAATTTGCCGCGTTTATCAAAGAAGACTTAACGATTTATCAC AACACAGAAGTGAATTCTGGATCCCAACAATTCATCAAAAACACATTTGATTATATGGCTCTCCTTGCCCTCGCTGGGTT TTTTCTCGGAGCCATCTCCGTGTACACAGCAGTTCGCACAAGGTTACTGGAAAAACGAAATGAAATTGCCATCCTTATGT GCCTTGGTGCCAAACCGAATGTCATCCTTTTATTAGTATTTTCGGAAATACTCATCCTTTCCCTTTTGGGAACTACTTTT GGTTTGGGACTCGGGTATTTGATCCAATCTTTATTGCCCGATATCAGTGGATTATTGGCGGTTGGTGCGGGAACTAGTGT TCTTGGGTTATCGGTATCCTCTCTCCTCTGGAGTCTTGTGCTTGGTGTGGTTTTACCACTTCTGATCTCCATACCACTTG TTCTGGAAACAAGGTCTGTCAAACCACTGGCGGCCTTAAAAGAAGTGGAATCACAAACCAGTGGGAATTTATCAACTTCC TATTGGCAATTTGGTTCTTTTGTTTTGATTTACCTTCTTTTTACAAGCCTTGCCATCTTAGAAACAGAAAGTATCTTCAA AGGGATTCTCTTCACACTTGTATTACTTACCTTGCCACTGCTTGTGTACGGATTGTACATTCTCTTTGGATCTTTCCTAC AAAAAATTTCAAAACTTGGATGGTTATCCAAAGAATGGAGCCTTGTCACAAAAAAAGTCACACGGAAATCAGGAGCCCTT CGCCTTTCCATCATTGGGCTTGGCTCTGCACTGTTTATCCTCACACTCTCTCTCATTTTACAGGAAAGTTTACTTGAGTT AAGTGGAGCAAGAGAGATCGAACGTAGGCCAAACATGTTCCTACTCGACATTCGTGAGACCCAGAAAAATGGCCTGCTAA CAACGATTTCATCCTTTCCTGTGGAAAAACAATTTGTGGCTCCTGTGATTGGAGCACGTTTGTCCAAAGTGAACGGGGAA CCCATTAAAAAAGAAGACACGATTCAAAACGCAATGGATCGGAATTGGCGAGCCACTGCAAGAACTCGCGAATACTTTTT ATCTTACCGAGACGAGTTGTATGATACAGAAGAGGTGACCAAAGGGAGTTGGTGGAACGAGTCTGGCCGAAATGAAATCT CCGTGGAACGTGATTTTGCGGGTTATTTACAAGCAGGAATCGGGGATGAACTCACTTTCAACGTCCAAGGCAGGGAAGTA TCGGGTAAAATCACGAACCTTCGTTCGGTGAACTGGGCCGATATGAAACCAAACTTTGTGGTTTTGTTTTCCCGAGGGAT TTTGGAAAAAGCTCCGAGGTTTTATATTGTTTCCCTTCTCATTGATGCAAGCGAGGACAGATACCAATTACAAAAGGTGA TCGTGAACCAGTTTCCGAATATCACAGTCATTGACACAGAAAAAACCATCCAAGCCTTTATGGGAATTTTAGAAAAAGTC ACCCAGATGATGGCACTGATGACTGCCTTTATCCTTGCCGCATCATTTGTCTTGGTGTTTACCACTCTTTATGCAAGCCA ATCCGAACGAAAACGTGAGTTTGCCTTATTGCGTGTGATCGGGGCAAACAGTCGTTTTATGATGAAACATTTTTTAAGGG AGGCATTACTCGTCTCAGTGATTTCGTTTTTCCTTGGACTTGTGTATTCCGTTCTCTCCAACGAAATATTGAACCGGTCA GTTTTGGAACTTCGTAGTGTGTATCCTTATGGACAACTCACACTTGTGTTTTTAGGGATTTGTTTTGTGACGGTGAGTTT GTATGCGGTTGGACTTTTTAGTTTCTTTCGGATGCCAACAAAGACAGTGCTGAAAGAGATTAAATAA
Upstream 100 bases:
>100_bases ATCGTAAATCTATTCCGAAAGTTAAGGTGTCTCCTCCGATCTCATCTAAATCCTCCACCAAACAAAGAAAAACGACGAAA CAGGCAAAGAAGGTGAGTCG
Downstream 100 bases:
>100_bases AAACAAAAAAGCCCGGGGTTTGAAACCGGGCTTTCTCATTGAAAGAGATGTATTCGGGATTATTGTGCTACCGAAATAAC CTCATCTCGGTTGATTACGT
Product: putative permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MKASLFRFYLKRELFSRFRYSLLIVVSITLGVGSVIGIHSYKDNTANAIKKEAKSIMGADLALQSPQEITDSAKELIKTH LPEGAKTSRSIQFLSMISNDSGTENSLSFIKGIETSYPFYGEMKTEPESAYRNLKPNQVLLDASLVENLKLKIGDRVRLG DSLLVLAGIVIKEPGAVGSFVGSAPGSIILKDTAIQTGLVQRGSRIRYTVYLKFPESIDSMEWKDKEFAAFIKEDLTIYH NTEVNSGSQQFIKNTFDYMALLALAGFFLGAISVYTAVRTRLLEKRNEIAILMCLGAKPNVILLLVFSEILILSLLGTTF GLGLGYLIQSLLPDISGLLAVGAGTSVLGLSVSSLLWSLVLGVVLPLLISIPLVLETRSVKPLAALKEVESQTSGNLSTS YWQFGSFVLIYLLFTSLAILETESIFKGILFTLVLLTLPLLVYGLYILFGSFLQKISKLGWLSKEWSLVTKKVTRKSGAL RLSIIGLGSALFILTLSLILQESLLELSGAREIERRPNMFLLDIRETQKNGLLTTISSFPVEKQFVAPVIGARLSKVNGE PIKKEDTIQNAMDRNWRATARTREYFLSYRDELYDTEEVTKGSWWNESGRNEISVERDFAGYLQAGIGDELTFNVQGREV SGKITNLRSVNWADMKPNFVVLFSRGILEKAPRFYIVSLLIDASEDRYQLQKVIVNQFPNITVIDTEKTIQAFMGILEKV TQMMALMTAFILAASFVLVFTTLYASQSERKREFALLRVIGANSRFMMKHFLREALLVSVISFFLGLVYSVLSNEILNRS VLELRSVYPYGQLTLVFLGICFVTVSLYAVGLFSFFRMPTKTVLKEIK
Sequences:
>Translated_848_residues MKASLFRFYLKRELFSRFRYSLLIVVSITLGVGSVIGIHSYKDNTANAIKKEAKSIMGADLALQSPQEITDSAKELIKTH LPEGAKTSRSIQFLSMISNDSGTENSLSFIKGIETSYPFYGEMKTEPESAYRNLKPNQVLLDASLVENLKLKIGDRVRLG DSLLVLAGIVIKEPGAVGSFVGSAPGSIILKDTAIQTGLVQRGSRIRYTVYLKFPESIDSMEWKDKEFAAFIKEDLTIYH NTEVNSGSQQFIKNTFDYMALLALAGFFLGAISVYTAVRTRLLEKRNEIAILMCLGAKPNVILLLVFSEILILSLLGTTF GLGLGYLIQSLLPDISGLLAVGAGTSVLGLSVSSLLWSLVLGVVLPLLISIPLVLETRSVKPLAALKEVESQTSGNLSTS YWQFGSFVLIYLLFTSLAILETESIFKGILFTLVLLTLPLLVYGLYILFGSFLQKISKLGWLSKEWSLVTKKVTRKSGAL RLSIIGLGSALFILTLSLILQESLLELSGAREIERRPNMFLLDIRETQKNGLLTTISSFPVEKQFVAPVIGARLSKVNGE PIKKEDTIQNAMDRNWRATARTREYFLSYRDELYDTEEVTKGSWWNESGRNEISVERDFAGYLQAGIGDELTFNVQGREV SGKITNLRSVNWADMKPNFVVLFSRGILEKAPRFYIVSLLIDASEDRYQLQKVIVNQFPNITVIDTEKTIQAFMGILEKV TQMMALMTAFILAASFVLVFTTLYASQSERKREFALLRVIGANSRFMMKHFLREALLVSVISFFLGLVYSVLSNEILNRS VLELRSVYPYGQLTLVFLGICFVTVSLYAVGLFSFFRMPTKTVLKEIK >Mature_848_residues MKASLFRFYLKRELFSRFRYSLLIVVSITLGVGSVIGIHSYKDNTANAIKKEAKSIMGADLALQSPQEITDSAKELIKTH LPEGAKTSRSIQFLSMISNDSGTENSLSFIKGIETSYPFYGEMKTEPESAYRNLKPNQVLLDASLVENLKLKIGDRVRLG DSLLVLAGIVIKEPGAVGSFVGSAPGSIILKDTAIQTGLVQRGSRIRYTVYLKFPESIDSMEWKDKEFAAFIKEDLTIYH NTEVNSGSQQFIKNTFDYMALLALAGFFLGAISVYTAVRTRLLEKRNEIAILMCLGAKPNVILLLVFSEILILSLLGTTF GLGLGYLIQSLLPDISGLLAVGAGTSVLGLSVSSLLWSLVLGVVLPLLISIPLVLETRSVKPLAALKEVESQTSGNLSTS YWQFGSFVLIYLLFTSLAILETESIFKGILFTLVLLTLPLLVYGLYILFGSFLQKISKLGWLSKEWSLVTKKVTRKSGAL RLSIIGLGSALFILTLSLILQESLLELSGAREIERRPNMFLLDIRETQKNGLLTTISSFPVEKQFVAPVIGARLSKVNGE PIKKEDTIQNAMDRNWRATARTREYFLSYRDELYDTEEVTKGSWWNESGRNEISVERDFAGYLQAGIGDELTFNVQGREV SGKITNLRSVNWADMKPNFVVLFSRGILEKAPRFYIVSLLIDASEDRYQLQKVIVNQFPNITVIDTEKTIQAFMGILEKV TQMMALMTAFILAASFVLVFTTLYASQSERKREFALLRVIGANSRFMMKHFLREALLVSVISFFLGLVYSVLSNEILNRS VLELRSVYPYGQLTLVFLGICFVTVSLYAVGLFSFFRMPTKTVLKEIK
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=282, Percent_Identity=26.5957446808511, Blast_Score=112, Evalue=7e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 94574; Mature: 94574
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKASLFRFYLKRELFSRFRYSLLIVVSITLGVGSVIGIHSYKDNTANAIKKEAKSIMGAD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHHHHHCCC LALQSPQEITDSAKELIKTHLPEGAKTSRSIQFLSMISNDSGTENSLSFIKGIETSYPFY HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC GEMKTEPESAYRNLKPNQVLLDASLVENLKLKIGDRVRLGDSLLVLAGIVIKEPGAVGSF CCCCCCHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCHHHH VGSAPGSIILKDTAIQTGLVQRGSRIRYTVYLKFPESIDSMEWKDKEFAAFIKEDLTIYH HCCCCCCEEEEHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEE NTEVNSGSQQFIKNTFDYMALLALAGFFLGAISVYTAVRTRLLEKRNEIAILMCLGAKPN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC VILLLVFSEILILSLLGTTFGLGLGYLIQSLLPDISGLLAVGAGTSVLGLSVSSLLWSLV EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LGVVLPLLISIPLVLETRSVKPLAALKEVESQTSGNLSTSYWQFGSFVLIYLLFTSLAIL HHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH ETESIFKGILFTLVLLTLPLLVYGLYILFGSFLQKISKLGWLSKEWSLVTKKVTRKSGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE RLSIIGLGSALFILTLSLILQESLLELSGAREIERRPNMFLLDIRETQKNGLLTTISSFP EEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEECCCCCCCCEEEHHCCC VEKQFVAPVIGARLSKVNGEPIKKEDTIQNAMDRNWRATARTREYFLSYRDELYDTEEVT CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHC KGSWWNESGRNEISVERDFAGYLQAGIGDELTFNVQGREVSGKITNLRSVNWADMKPNFV CCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEEEEECCCEECCCCCCCCCCCCCCCCCCEE VLFSRGILEKAPRFYIVSLLIDASEDRYQLQKVIVNQFPNITVIDTEKTIQAFMGILEKV EEEECCHHHHCCHHEEEHHHHCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH TQMMALMTAFILAASFVLVFTTLYASQSERKREFALLRVIGANSRFMMKHFLREALLVSV HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH ISFFLGLVYSVLSNEILNRSVLELRSVYPYGQLTLVFLGICFVTVSLYAVGLFSFFRMPT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH KTVLKEIK HHHHHHCC >Mature Secondary Structure MKASLFRFYLKRELFSRFRYSLLIVVSITLGVGSVIGIHSYKDNTANAIKKEAKSIMGAD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHHHHHCCC LALQSPQEITDSAKELIKTHLPEGAKTSRSIQFLSMISNDSGTENSLSFIKGIETSYPFY HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC GEMKTEPESAYRNLKPNQVLLDASLVENLKLKIGDRVRLGDSLLVLAGIVIKEPGAVGSF CCCCCCHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCHHHH VGSAPGSIILKDTAIQTGLVQRGSRIRYTVYLKFPESIDSMEWKDKEFAAFIKEDLTIYH HCCCCCCEEEEHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEE NTEVNSGSQQFIKNTFDYMALLALAGFFLGAISVYTAVRTRLLEKRNEIAILMCLGAKPN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC VILLLVFSEILILSLLGTTFGLGLGYLIQSLLPDISGLLAVGAGTSVLGLSVSSLLWSLV EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LGVVLPLLISIPLVLETRSVKPLAALKEVESQTSGNLSTSYWQFGSFVLIYLLFTSLAIL HHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH ETESIFKGILFTLVLLTLPLLVYGLYILFGSFLQKISKLGWLSKEWSLVTKKVTRKSGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE RLSIIGLGSALFILTLSLILQESLLELSGAREIERRPNMFLLDIRETQKNGLLTTISSFP EEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEECCCCCCCCEEEHHCCC VEKQFVAPVIGARLSKVNGEPIKKEDTIQNAMDRNWRATARTREYFLSYRDELYDTEEVT CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHC KGSWWNESGRNEISVERDFAGYLQAGIGDELTFNVQGREVSGKITNLRSVNWADMKPNFV CCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEEEEECCCEECCCCCCCCCCCCCCCCCCEE VLFSRGILEKAPRFYIVSLLIDASEDRYQLQKVIVNQFPNITVIDTEKTIQAFMGILEKV EEEECCHHHHCCHHEEEHHHHCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH TQMMALMTAFILAASFVLVFTTLYASQSERKREFALLRVIGANSRFMMKHFLREALLVSV HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH ISFFLGLVYSVLSNEILNRSVLELRSVYPYGQLTLVFLGICFVTVSLYAVGLFSFFRMPT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH KTVLKEIK HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]